Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1780 ATGCgGTCTTTACTTGTAGCCAATGCTGGAGATTGCCGCGCTGTCTTGTCTCGCCATGGAAGGGCTATAGAAATGTCTAAAGATCATAGGCCAAGCTGTATCAATGAAAGGACGCGGGTTAAGTCCCTAGGTGGCTTCATTGATGATGGTTACCTGAATGGCAAGTTAGGTGTCACTCGCGCTCTTGGAGACTGGCACCTTGAAGGAATGAAGGAAATGAGTGAAAGAGGAGGACCACTGAGTGCTGAACCTGAACTTAAATTGATGACATTGACCAAGAAGATGATTCTTGATAATAGCTAG 303 0.4554 MRSLLVANAGDCRAVLSRHGRAIEMSKDHRPSCINERTRVKSLGGFIDDGYLNGKLGVTRALGDWHLEGMKEMSERGGPLSAEPELKLMTLTKKMILDNS 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1780 100 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 2 94 - -
Ssu1g1780 100 PANTHER PROTEIN PHOSPHATASE 2C 2 94 IPR015655 GO:0004722|GO:0006470
Ssu1g1780 100 SUPERFAMILY PP2C-like 4 92 IPR036457 -
Ssu1g1780 100 Pfam Protein phosphatase 2C 3 93 IPR001932 -
Ssu1g1780 100 CDD PP2Cc 4 94 IPR001932 -
Ssu1g1780 100 ProSiteProfiles PPM-type phosphatase domain profile. 1 100 IPR001932 -
Ssu1g1780 100 Gene3D - 1 97 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1780 Ssu-Chr1 44397160 44397587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1780 2 94 PP2C-type Phosphatase Gene Family AT2G25620 61.053 1.38e-33 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1780 K14803 - gmx:100813157 170.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0929 6 14991022 14991516 Ssu1g1780 1 44397160 44397587 PCT