Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1779 ATGATTGCGGACAAGAAACAGAATCTGATGAATTTTGTCCCGGCTCTTCGGTCTGGAGAGTGGTCTGATATTGGAAAACGCCCTTACATGGAGGATACCCACATATGCATTGGAGATTTGGCAAGGAAGTTTAATTATGATGAACTTTCTGAGGAAGCTGTTTCCTTTTATGGTGTATTTGATGGACATGAAGGAAAGAGTGCTGCACAATTTGTCCGTGATCGTCTGCCAAGAGTTATTGTTGAGATGTTAACTTTCCTTTGGAGCTTGAGAAGGTGGTCAAAGGTCATTTTGGAGACTGATGCTGCTTTTTAA 315 0.4159 MIADKKQNLMNFVPALRSGEWSDIGKRPYMEDTHICIGDLARKFNYDELSEEAVSFYGVFDGHEGKSAAQFVRDRLPRVIVEMLTFLWSLRRWSKVILETDAAF 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1779 104 Gene3D - 5 103 IPR036457 -
Ssu1g1779 104 PANTHER PROTEIN PHOSPHATASE 2C 2 104 IPR015655 GO:0004722|GO:0006470
Ssu1g1779 104 Pfam Protein phosphatase 2C 28 86 IPR001932 -
Ssu1g1779 104 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 2 104 - -
Ssu1g1779 104 ProSiteProfiles PPM-type phosphatase domain profile. 17 104 IPR001932 -
Ssu1g1779 104 SUPERFAMILY PP2C-like 10 89 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1779 Ssu-Chr1 44395707 44396566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1779 6 104 PP2C-type Phosphatase Gene Family AT2G25620 44.000 4.43e-22 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Ssu1g1779 PP2C 1.5e-05 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1779 K14803 - gmx:100813157 161.77