Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1777 ATGGCTGAACAAACTGAGAAGGCTTTTCTGAAGCAACCGAAAGTGTTTCTATGCTCTAAGAAAAGTGGGAAGGGAAAACGGCCTGGGAAAGGTGGGAATCGCTTTTGCAAGTCAGTTGGGCTTGGATTCAAGACTCCCAGGGATGCCATTGAAGGAACCTACATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGGGGTCGTATCCTAGCTGGTACTTGTCACAGTGCTAAGATGACAAGGACCATTATTGTTAGGAGGAATTATCttcattttattaagaaataccAGAGATATGAGAAGCGGCATTCAAATATTCCTGCACATGTATCACCATGTTTCCGTGTGAAGGAAGGAGATCACGTAATTATTGGCCAATGCAGGCCACTCTCAAAGACAGTGAGGTTCAATGTGTTGAAAGTGATTCCAGCCGGATCCTCTAGCGGGTGTAATAAGACACTTAGCTCCTCTTTTGATGCGGATGGAGGAGGATTTTGTGATAAGTTTCTCCTCAACAAACCTTTGTGCTATGAGTCGGAAGGAAGCTATCTAGCAGCTAGACAAAGGCAAACGTCACTGGTGTTGGATGAGCGAAGGTGGTGGACACCGGCAAGCACTATGATGTTCAATGTTGAGGCTAACATAGTTgccaataaatacaaaaatttgaaagaaagaaagaacctTTTGTTAGAAACTACAAAGGAAAAGTGTTATTGCCAAGGATCATTGACAATGACATCAAGGACAGTGATCAGTGTCGTAGGTGTGAGAGTTGGGATTATGAGGTGTAGCGCAGATAGCCTTATTTGA 819 0.4176 MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFCKSVGLGFKTPRDAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGCNKTLSSSFDADGGGFCDKFLLNKPLCYESEGSYLAARQRQTSLVLDERRWWTPASTMMFNVEANIVANKYKNLKERKNLLLETTKEKCYCQGSLTMTSRTVISVVGVRVGIMRCSADSLI 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1777 272 Gene3D - 1 158 - -
Ssu1g1777 272 SUPERFAMILY Nucleic acid-binding proteins 68 147 IPR012340 -
Ssu1g1777 272 Pfam Ribosomal protein S17 74 142 IPR000266 GO:0003735|GO:0005840|GO:0006412
Ssu1g1777 272 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 156 IPR000266 GO:0003735|GO:0005840|GO:0006412
Ssu1g1777 272 ProSitePatterns Ribosomal protein S17 signature. 121 133 IPR019979 GO:0003735|GO:0005840|GO:0006412
Ssu1g1777 272 Pfam Ribosomal_S17 N-terminal 4 72 IPR032440 -
Ssu1g1777 272 PANTHER 40S RIBOSOMAL PROTEIN S11-1-RELATED 1 156 - -
Ssu1g1777 272 TIGRFAM uS17_arch: ribosomal protein uS17 55 143 IPR028333 -
Ssu1g1777 272 PRINTS Ribosomal protein S17 family signature 121 131 IPR000266 GO:0003735|GO:0005840|GO:0006412
Ssu1g1777 272 PRINTS Ribosomal protein S17 family signature 88 111 IPR000266 GO:0003735|GO:0005840|GO:0006412
Ssu1g1777 272 PRINTS Ribosomal protein S17 family signature 131 138 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1777 Ssu-Chr1 44362696 44370811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1777 1 157 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 87.261 1.85e-90 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1777 K02949 - gmx:100500186 296.204