Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1766 ATGTTGAGAGTGAAGGGAGGGAGCAGGCCACCGTGGGTGGGACTCGCCGCCGCGGTGTGGGTTCAAATCGCGTCGGGGAACACCTTCACCTTCCCCCTCTACTCCCACTCCTTGAAGTCAGTTCTCTTCTTCAACCAGCGCCAGGTCACACTCCTCGGTGTCGCCATCGACATCGGCGAAAACCTCGGCCTCCTCCCCGGCCTCGCCTGCAACAAGTTCCCCCCTTGGCTCCTCCTCCTCGTCGGCTCCCTCGCCTCCTTCCTCGGCTACGGCCTCCTCTTCCTCGCCATCTCCAACACCCTCCACTCCCTCCCTTACTTACTGCTATGGTTTGCTCTGGTTGTTGCCGCTAACAGTAGTGCGTGGCTAACCACTGCGGTTCTCGTGACCAACATGAGAAACTTCCCTGCTAGCCGGGGCTCCGTTTCGGGGGTCATCAAAGGTTACGGGGGGCTCAGCGCTGCGGTTTTTACCGAGATTTACAGCATAGTGCTTCATGATTCTTCTTCCAAGTTTCTCTTGTTTCTTGCCGTTGGTATTCCTGTTGTATGTTTCAGCATGATGTTTCTCGTTAGGCCTTGTACCCCGGCCACGGGTGATGACCCTGCAGAACATTACCATTTTCTGTTTGTCCAAGGTTCCAGTGTGGTCTTGGGTGTGTACCTTCTTGCAACTACAATACTTGGTAATGTTATTCCGTTTAGTGGTGCTGTTTCGTATGTTTTGGTGGCTGTGATGATTCTGCTTCTCATGGCTCCGCTTGCTGTCCCTTTGAAGATGACATTGTTTCCTAGGAAAGATTCCAAATCAGACTCGCCCGAGCAACAAGTTGGGTCTTCTGAGGGCAAAGATGAGAATGCGGAGCCGCTGCTGGCGTCTTCGTCGGCGGGGGCACTCGGGAGCTTTACTGATCAAGATGATTCATCTGAGGTGACTGAGCTTCTTGCTTTGGGTGAGGGGGCGGTGAAGCAGAAGAAGAGAAGGCCTAAACGTGGGGAagattttaagttcaaagagGCTGTAGTGAAGGCGGATTTCTGGCTGCtgttttttgtattctttgttGGTGTTGGCACTGGGGTTACTGTTCTTAATAATCTGGCCCAAATAGGTATTGCTCAAGGGGAGGAAGACACCACTACCTTGCTGTCGATTTTCAGTTTTTGCAATTTTGTGGGGCGGCTTGGTGGAGGAGTTGTTTCAGAACATTTTGTCAGgaCAAAAACAATCCCAAGGACAGTCTGGTTGACGTGCACGCAGACAATTATGCTTGTTGTATACCTTCTGTTTGCCTATGCTATCAATGGAACCCTTTATCCTGCAATTGCATTTCTTGGTGTCTGCTATGGTGTGCAAGTTTCCGTGATGCTCCCCACTGTTTCCGAGCTTTTTGGTTTGAAGCACTTTGGCGTATTGAGCAGCTTCATGTCGTTGGGGAATCCAATTGGTGCATTCCTCTTTTCAGCTCTGCTAGCAGGGAACATATATGATAACGAGGCAGCAAAGCAGCATGGTATAGGCCTTCTTGCTTCTGGTGTTTCCTGCGTGGGTCCAAATTGCTTTAAGCTTacctttttcattctttctgGGGTGTGTGCTGCTGGCATCATCTTGAGCGTTATCCTGACTTTGAGAATTAAGCCCGTTTACCAAATGCTTTATGCTGGAGGTTCTTTCAGGCTGCCTCAAACATCTTAA 1698 0.4935 MLRVKGGSRPPWVGLAAAVWVQIASGNTFTFPLYSHSLKSVLFFNQRQVTLLGVAIDIGENLGLLPGLACNKFPPWLLLLVGSLASFLGYGLLFLAISNTLHSLPYLLLWFALVVAANSSAWLTTAVLVTNMRNFPASRGSVSGVIKGYGGLSAAVFTEIYSIVLHDSSSKFLLFLAVGIPVVCFSMMFLVRPCTPATGDDPAEHYHFLFVQGSSVVLGVYLLATTILGNVIPFSGAVSYVLVAVMILLLMAPLAVPLKMTLFPRKDSKSDSPEQQVGSSEGKDENAEPLLASSSAGALGSFTDQDDSSEVTELLALGEGAVKQKKRRPKRGEDFKFKEAVVKADFWLLFFVFFVGVGTGVTVLNNLAQIGIAQGEEDTTTLLSIFSFCNFVGRLGGGVVSEHFVRTKTIPRTVWLTCTQTIMLVVYLLFAYAINGTLYPAIAFLGVCYGVQVSVMLPTVSELFGLKHFGVLSSFMSLGNPIGAFLFSALLAGNIYDNEAAKQHGIGLLASGVSCVGPNCFKLTFFILSGVCAAGIILSVILTLRIKPVYQMLYAGGSFRLPQTS 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1766 565 Gene3D MFS general substrate transporter like domains 206 544 IPR036259 -
Ssu1g1766 565 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 2 565 - -
Ssu1g1766 565 Pfam Nodulin-like 11 258 IPR010658 -
Ssu1g1766 565 SUPERFAMILY MFS general substrate transporter 14 196 IPR036259 -
Ssu1g1766 565 SUPERFAMILY MFS general substrate transporter 222 548 IPR036259 -
Ssu1g1766 565 MobiDBLite consensus disorder prediction 266 288 - -
Ssu1g1766 565 CDD MFS_Mch1p_like 10 536 - -
Ssu1g1766 565 PANTHER NODULIN-LIKE/MFS TRANSPORTER 2 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1766 Ssu-Chr1 43864177 43867642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1766 2 565 Nodulin-like Gene Family AT1G80530 56.239 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1766 - - gmx:100794012 993.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0940 6 15210271 15211426 Ssu1g1766 1 43864177 43867642 PCT