Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1758 ATGACGTCACGTTCGGGGCACGGTAGCAGCAGTGGTGGGAACAGCAGGACCCGTGTGGGGAAGTACGAACTGGGTCGGACCCTGGGCGAGGGCAATTTCGCCAAGGTGAAGTTCGCGAGGCACGTGGAAACCAGAGAGAACGTCGCCATCAAGATTCTCGACAAGGAAAAAGTTCTTAAGCACAAAATGATTGCCCAGATTAAACGAGAAATATCAACAATGAAACTGATTAGACACCCAAATGTCATCCGTATGTATGAGGTAATGGCTAGCAAAACAAAGATATACATTGTATTGGAATTGGTGACGGGTGGGGAGCTGTTTGATAAAATTGCACGCGGTGGGAGGTTGAAGGAAGATGAagcaagaaaatattttcaacagCTTATATGTGCTGTGGATTACTGTCATAGTAGAGGTGTTTTCCATAGGGATCTAAAGCCTGAGAATTTATTGCTTGATGCTAATGGAGTGCTTAAAGTATCAGATTTTGGATTGAGTGCATTGCCTCAACAACTCCGGGAAGATGGGCTACTTCACACAACATGCGGTACGCCAAATTATGTTGCTCCAGAGGTAATTCACAACAAAGGCTATGATGGTGCAAAGGCTGATCTATGGTCCTGTGGTGTTATTCTCTTTGTTTTGATGGCTGGCTATTTGCCCTTTGAGGAAAACAATCTGACGGCTTTATATAAAAAGATTTTCAAGGCTGAGTTCACTTGTCCTCCATGGTTCTCTTCAAGTGCAAAGAAACTAATCAAAAGAATCCTTGATCCCAATCCTGCCACTCGGATTACAATTGCTGAGGTCATTGAGAATGACTGGTTCAAGAAGGGATATAAGCCTCCCGTATTTGAACAGGCTAATGTTAGTCTTGATGATGTAAATTCTATTTTCAGTGAATCTACGGATTCAGAAAATCTTGTCGTGGAGAGGCGTGAAGAGGGGCCTGTGGCACCTGTGACTCTGAATGCCTTTGAGCTTATCTCTAAATCTCAGGGCCTCAATCTTAGTAGTCTTTTTGAGAAGCAAATGGGACTAGTTAAAAGGGAAACACGATTCACATCCAAATGTTCAGCAGatgaaataatttcaaaaattgagcaAGCTGCAGGACCCTTGGGTTTTGATGTTAAGAAGAACAACTGTAAGTTAAAGATTCAAGGGGAAAAGACTGGACGGAAAGGTCATCTATCTGTAGCCACTGAGATCTTAGAGGTGGCCCCTTCACTATACATGGTGGAGCTGCGTAAGTCTGAAGGAGATACTCTGGAATTTCACAAGTTCTACAAAAATCTTGCTGCTGGACTGAAAGATATTGTTTGGAAAGCCGAGCCTCTCGATGAAGAGAAGGATGGTGCCAATCCATCAAACTAA 1380 0.4239 MTSRSGHGSSSGGNSRTRVGKYELGRTLGEGNFAKVKFARHVETRENVAIKILDKEKVLKHKMIAQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLELVTGGELFDKIARGGRLKEDEARKYFQQLICAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQLREDGLLHTTCGTPNYVAPEVIHNKGYDGAKADLWSCGVILFVLMAGYLPFEENNLTALYKKIFKAEFTCPPWFSSSAKKLIKRILDPNPATRITIAEVIENDWFKKGYKPPVFEQANVSLDDVNSIFSESTDSENLVVERREEGPVAPVTLNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSKCSADEIISKIEQAAGPLGFDVKKNNCKLKIQGEKTGRKGHLSVATEILEVAPSLYMVELRKSEGDTLEFHKFYKNLAAGLKDIVWKAEPLDEEKDGANPSN 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1758 459 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 16 449 - -
Ssu1g1758 459 Gene3D Phosphorylase Kinase; domain 1 12 101 - -
Ssu1g1758 459 Gene3D Kinase associated domain 1, KA1 319 444 - -
Ssu1g1758 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Ssu1g1758 459 MobiDBLite consensus disorder prediction 1 17 - -
Ssu1g1758 459 CDD CIPK_C 325 440 - -
Ssu1g1758 459 MobiDBLite consensus disorder prediction 1 20 - -
Ssu1g1758 459 Gene3D Transferase(Phosphotransferase) domain 1 102 284 - -
Ssu1g1758 459 ProSiteProfiles Protein kinase domain profile. 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1758 459 SUPERFAMILY Protein kinase-like (PK-like) 19 304 IPR011009 -
Ssu1g1758 459 CDD STKc_SnRK3 21 276 - -
Ssu1g1758 459 PANTHER SERINE/THREONINE KINASE 16 449 - -
Ssu1g1758 459 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Ssu1g1758 459 SMART serkin_6 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1758 459 ProSiteProfiles NAF domain profile. 319 343 IPR018451 GO:0007165
Ssu1g1758 459 Pfam NAF domain 321 381 IPR004041 GO:0007165
Ssu1g1758 459 Pfam Protein kinase domain 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1758 Ssu-Chr1 43521909 43531328 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1758 5 452 CBL-interacting serine-threonine protein kinases AT1G01140 68.722 0.0 653
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu1g1758 Pkinase 4.2e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1758 - - gmx:100788746 862.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1005 6 16377859 16379456 Ssu1g1758 1 43521909 43531328 PCT