Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1757 ATGGCCCCAGCCGCTGGAGCCGTAGCGTTACACTCTTCCCTTTGCTCCATCTCTTCTGAGAAACCCTCTTCTCCTCTAAGATCAACCCTTCATGTGGCACCCAAACCCAAAAGCCTCCTCCAAAACCACCCACTATATACCCCAACCCATGCCAAACTTTCCCTTGAATTCAAAGAGAAAATTCTCTGCCTTGAGGTAATGGGTGTTGATGCAGGCAAAGCACTGTCCCAAAACCCTGACCTCCGCACAGCCACCATGGAATCCATTCACTCCATCGTCTCCTTCCTTCTGTCCAAAGGCCTTCAAGAAAAGGACTTGCCCAGGATCTTTGGCATGTGCCCCAAGATTCTCACCTCTGACATCAAAACTGATCTCAACCcagtttttgattttatcttgCATGAACTCAATGTCCCGGAAAATAACTTCAGGAGGGTCGTCAATAAGTGCCCAAGATTGCTTGCATCCAGTGTGAAAGACCAGCTTAGGCCAGCTTTGATTTACCTAAAGAGACTTGGATTCAAAGATTTGGGGGCCATGGCTTATCAAGACTCTGTTCTGTTGGTGTCTAACGTGGAAAATACCCTCATCCCTAAACTGAAGTTTTTGGAGACTTTGGGACTGTCCAAGGATGAGGTCAGGAGTATGGTGTTGAGATGTCCAGCACTGCTTACTTTCagcatagaaaataattttcagcCAAAGTATGAGTACTTTGCTGGGGAAATGGGGGGAAAATTGGAGGAGCTGAAAGAGTTTCCTCAGTACTTTGCATTTAGTTTGGAGAACAGGATAAAGCCTAGACACATGGAGGTTGTGCAAAGTGGGGTCAATTTACCTTTGTCAGTGATGCTTAAAAGCACTGATGAAGAATTTAGGGAGCTGGTAAAGCAGGGGGGTGGATGA 906 0.4492 MAPAAGAVALHSSLCSISSEKPSSPLRSTLHVAPKPKSLLQNHPLYTPTHAKLSLEFKEKILCLEVMGVDAGKALSQNPDLRTATMESIHSIVSFLLSKGLQEKDLPRIFGMCPKILTSDIKTDLNPVFDFILHELNVPENNFRRVVNKCPRLLASSVKDQLRPALIYLKRLGFKDLGAMAYQDSVLLVSNVENTLIPKLKFLETLGLSKDEVRSMVLRCPALLTFSIENNFQPKYEYFAGEMGGKLEELKEFPQYFAFSLENRIKPRHMEVVQSGVNLPLSVMLKSTDEEFRELVKQGGG 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1757 301 Pfam mTERF 187 292 IPR003690 GO:0003690|GO:0006355
Ssu1g1757 301 Pfam mTERF 58 177 IPR003690 GO:0003690|GO:0006355
Ssu1g1757 301 PANTHER CGI-12 PROTEIN-RELATED 14 298 IPR003690 GO:0003690|GO:0006355
Ssu1g1757 301 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 14 298 - -
Ssu1g1757 301 Gene3D Transcription termination factor 3, mitochondrial 132 298 IPR038538 -
Ssu1g1757 301 SMART mt_12 72 102 IPR003690 GO:0003690|GO:0006355
Ssu1g1757 301 SMART mt_12 247 278 IPR003690 GO:0003690|GO:0006355
Ssu1g1757 301 SMART mt_12 178 209 IPR003690 GO:0003690|GO:0006355
Ssu1g1757 301 SMART mt_12 144 175 IPR003690 GO:0003690|GO:0006355
Ssu1g1757 301 SMART mt_12 107 139 IPR003690 GO:0003690|GO:0006355
Ssu1g1757 301 SMART mt_12 214 246 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1757 Ssu-Chr1 43514930 43515835 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu1g1757 mTERF 4.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1757 K15032 - gmx:100788221 546.584