Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1751 ATGAGGCAGAAGGGTGATGCGATGAGGCAGTCTTTTGATCCTTCCTCTTTGGGTCCTTCCAAGATTCCATCTATAAAAATACCTGGAAAATTGGGGAATGGTGCGTGGGAGGCTTTGTCTGGATCTGATTCCTACCAAGCTTCATCTGATGCTAGCCTCTTTTCTAGCTCATTACCTGCTCTTCCGCATGAAAAATTGAACTTGAATGAAACTGCAAATGGTTATCAATCTGTTGATGACATCTCATCTGGCTTTAAGAAGATCCGTCAAGATGCAGAGGGCAATGATTCACTTGAAGATGGTGATACTCATGCAATTGGAACCATGCTTCCTGATGATGAGGAGGAGCTTTTAGCCGGCATAATGGATGATTTTGACCTAAGTGGTTTGCCTGGTTCCCTTGAGGACTTGGAAGAGTATGATCTTTTTGGTAGTGGTGGAGGTATGGAACTAGAAACTGATCCACAGGAAAGTCTCACTGTGGGTATGTCTAAGTTAAGCTTCCCTGATAGTACTGTTGGCAATGGTTTGCCCCATTATTCTTTTCCCAATGGTGTGGGAACTGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGAACATTGTTTGTTCGAAATATTAACAGTAACGTGGAGGATTCAGAGCTGAGAGCCCTTTTTGAGCAATATGGTGATATTAGAACCCTATATACTGCATGCAAACATCGGGGATTTGTAATGATATCCTATTATGACATCCGTGCTGCTCGAACAGCTATGCGTGCATTACAAAACAAACCTCTGCGGCGCAGGAAACTAGACATTCACTTCTCAATACCAAAGGATAATCCATCAGACAAGGATATCAATCAAGGAACATTGGTAGTTTTCAATTTGGATCCGTCTGTTTCAAATGAAGACCTCCGTCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCAcaagtttattgaattttatgatGTCAGAGCTGCAGAAGCAGCACTTAAATCGTTAAACAGGAGTGACATAGCTGGTAAACGCATAAAGCTTGAACCTAGTCGACCTGGAGGAGCTCGTAGAAATTTGATGCTCCAATTAAATCAAGAGCTTGACCAAGATGAATCTCGGGGTTTTCGATATCCAGTGGGTTCACCTGTAGCTAACTCTCCTCCAGGTAACTGGTTACAGTTCAACAGCCCTGTTGAGCAGAATTCAATGCAAACTATCAATCATTCTCCTGGTTCTAGGATCATGAGCCCAACAACAGGCAATCAATTACCTGGATTAGCTTCAATTTTGCAGCCACAAGTATCTAACACTGTGAAGGCTGCTGCTATTGGCAATGACTTGGGAAGGAGCAGTCAAGGAGAGCACATATTTACCAGTATGAATTCATCACATGGAACTACTTTTCAGTCGCATTCACTTCCAGAGCCACAATTCAGCCAATATCGTGGGGCATTGTCCTCATTTGGTCCATCAACATCAAATGGGTCCTCAGTGGAAACTTTGTCTGGGCCACAGTTTCTATGGGGAAGCCCAACCCTCTACTCGGAGCATACCAAACCTTCAGCTTGGCCAAGATCATCTGTGGGGCACCCATTTGCATCCAATGGAAAGAGCCATGCCTTCCCATACTCAAGTCAGAATAGTTCTTTTGTTGGTTCATCCCagcatcatcaccatcatcatgtCGGCTCTGCCCCATCAGGTTTGCCTTTTGAGAGGCACTTTGGTTTCCATCTTGAGTCATCTGAAACTTCATTCATGAATAATGTTGGTTATGGAGGCATGGGTCTAGGGCACAATGATGGAAATTACATGGTTAATGTGGGTGGATCTGTTAATGCTAACATTACTATTCCAAGAAATATATCTGATAATGGTTCATCAAACTTCAGAATGAGATCTTCTCCTAGGCTTAGCCCTGTCTTTTTGGGAAATGGTCCTTATCCAGGACTGCCAACTACCACTTTGGAGGGTTTGGCTGACCGTGCTCGGAGTAGATGGATAGAGAACAATGGGAGCCAAGTTGATAGCAAGAAGCAATTTCAGCTTGACTTGGATAAGATTAAAAGTGGTGAAGATACAAAGACTACTTTAATGATAAAGAATATCCCAAACAAATACACCTCAAAAATGTTATTAGCTGCCATTGACGAAAATCACAGGGGTACTTATGATTTTCTCTATTTGCCAATTGACTTTAAGAATAAATGCAATGTGGGCTATGCATTTATCAACATGCTGTCACCCTCTCTTATTATTCCATTCTACGAGACATTCAACGGGAAGAAATGGGAGAAATTTAATAGTGAAAAAGTTGCTTCTTTGGCATATGCTCGAATCCAAGGAAAGACTGCCCTTGTGAGCCACTTccaaaattcaagtttgatGAATGAAGATAAGCGATGCCGCCCTATTCTCTTCCACTCAGAGGGTTCTGAAGCTGGTGATCTGATCGTACAAGAGCATCTTCCCTCCAACTCCAACAATATAAACATACCGGCACTAAGCCCAAGTGAGTTGCGTTCAAGTGATTCTGCTGGTAGTCCTCCAAAGGCAGGCCCTTCTGCGAGCTCGGacacaaattaa 2607 0.4212 MRQKGDAMRQSFDPSSLGPSKIPSIKIPGKLGNGAWEALSGSDSYQASSDASLFSSSLPALPHEKLNLNETANGYQSVDDISSGFKKIRQDAEGNDSLEDGDTHAIGTMLPDDEEELLAGIMDDFDLSGLPGSLEDLEEYDLFGSGGGMELETDPQESLTVGMSKLSFPDSTVGNGLPHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRGFRYPVGSPVANSPPGNWLQFNSPVEQNSMQTINHSPGSRIMSPTTGNQLPGLASILQPQVSNTVKAAAIGNDLGRSSQGEHIFTSMNSSHGTTFQSHSLPEPQFSQYRGALSSFGPSTSNGSSVETLSGPQFLWGSPTLYSEHTKPSAWPRSSVGHPFASNGKSHAFPYSSQNSSFVGSSQHHHHHHVGSAPSGLPFERHFGFHLESSETSFMNNVGYGGMGLGHNDGNYMVNVGGSVNANITIPRNISDNGSSNFRMRSSPRLSPVFLGNGPYPGLPTTTLEGLADRARSRWIENNGSQVDSKKQFQLDLDKIKSGEDTKTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKTALVSHFQNSSLMNEDKRCRPILFHSEGSEAGDLIVQEHLPSNSNNINIPALSPSELRSSDSAGSPPKAGPSASSDTN 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1751 868 Gene3D - 285 380 IPR012677 -
Ssu1g1751 868 PANTHER RNA RECOGNITION MOTIF-CONTAINING 10 859 - -
Ssu1g1751 868 SUPERFAMILY RNA-binding domain, RBD 704 788 IPR035979 GO:0003676
Ssu1g1751 868 Gene3D - 190 284 IPR012677 -
Ssu1g1751 868 CDD RRM2_MEI2_like 285 355 - -
Ssu1g1751 868 SUPERFAMILY RNA-binding domain, RBD 198 361 IPR035979 GO:0003676
Ssu1g1751 868 CDD RRM3_MEI2_like 705 790 IPR034454 -
Ssu1g1751 868 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 267 IPR000504 GO:0003723
Ssu1g1751 868 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 288 353 IPR000504 GO:0003723
Ssu1g1751 868 MobiDBLite consensus disorder prediction 1 28 - -
Ssu1g1751 868 Pfam RNA recognition motif 2 702 798 IPR007201 -
Ssu1g1751 868 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 359 IPR000504 GO:0003723
Ssu1g1751 868 CDD RRM1_MEI2_like 200 276 IPR034453 -
Ssu1g1751 868 SMART rrm1_1 202 270 IPR000504 GO:0003723
Ssu1g1751 868 SMART rrm1_1 287 355 IPR000504 GO:0003723
Ssu1g1751 868 SMART rrm1_1 704 780 IPR000504 GO:0003723
Ssu1g1751 868 PANTHER PROTEIN MEI2-LIKE 2 10 859 - -
Ssu1g1751 868 MobiDBLite consensus disorder prediction 837 868 - -
Ssu1g1751 868 MobiDBLite consensus disorder prediction 553 573 - -
Ssu1g1751 868 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 274 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1751 Ssu-Chr1 43378455 43383424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1751 196 396 Eukaryotic Initiation Factors Gene Family AT1G71770 26.522 1.88e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1751 - - gmx:100800877 1588.93