Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1749 ATGAGCTTTGGAAGTAGAGGGAAGCTAAGAGACACAAGCTTGAGCACATCAGCTGAAAGCAACATGAACACCCAGAGGGACAAAACACTGGCTCAGTACAGTGCAGATGCTGAGATTCTGGCTGAGTTTGAGCAGTCTGGTGTTTCTGGCAAATCATTTGACTACTCAAGGATGATTCTTGATCCTCCCAGGTTAGTGTCTGAGGAGAAAATGATTGCATATTTGTCCAAAATCCAAAGGGGTGGCCTTATCCAACCCTTTGGTTGTATGCTTGCAATTGAGGAACCTACTTTTAGGATCATTGGGTACAGTGAGAATTGCTTTAAATTGTTGGGTTTGGAGAGGCAAATTGACTCTAAGCAGTTCATGGGTCTTATTGGGGTTGATGCCACAACCCTTTTCACTCCCTCTTCTGGGGCTTCCCTTGCAAAAGCTGTGGCTTCCAGGGAAATTTCGCTTTTGAACCCAATTTGGGTCTATGCAAGGGCAACCCAGAAGCCATTTTATGCTGTAATGCATAGGATTGATGTTGGGGTTGTGATTGATTTGGAGCCTGCACAGTCGAGTGATCCGGCATTGTCACTTGCTGGGGCAGTTCAGTCACAGAAGCTGGCTGTTAGAGCAATTTCAAGGCTGCAATCTCTTCCTGGGGAAGATATTGGTCTGCTGTGTGACACGGTTGTTGAGGAAGTGCAGAAGCTTACTGGATATGACAGGGTTATGGTTTACAAGTTTCATGAGGATGATCATGGTGAGGTTGTGTCTGAGATTAGGAGGTCAGATTTGGAGCCTTACTTAGGTTTGCATTATCCTGCCACAGATATCCCTCAAGCTTCTCGCTTCTTGTTCAAGCAAAACCGGGTCAGGATGATTTGTGATTGCCATGCAAAGCCGGTTAGGGTCATTCAGAGTGAAGAATTAAGGCAACCTCTTTGCTTGGTGAACTCAACCCTTAGGCTACCACATGGTTGTCACACACAGTACATGGCTAACATGGGCTCAATTGCCTCTCTGGTGATGGCAATTATAGTTAATGGAAATGATACAACAAGGCTTTGGGGTTTGCTAGTTTGTCATCACACTTCACCACGCTATGTGTCTTTCCCAGTTCGTTATGCTTGTGAATTCCTAATGCAGGCTTTTGGACTGCAGCTTTACATGGAGATTCAATTGGCATCACAaatggaagagaagagaattcttaaaacacaaaccttGCTGTGTGACATGCTCCTTCGAGATGCACCGTTCGGCATTGTGACTCAATCCCCAAGTATCATGGATCTAGTGAAGTGTGATGGGGCTGCCTTGTATTATGAAGGAAACTGTTGGCTGTTAGGCACAACCCCAACTGAAGCACAGGTGAAAGACATTGCAGAATGGTTACTTAGTAATCATGGGGACTCGACAGGTTTGACAACAGATAGTTTGGCTGATGCTGGTTATCCAGGTGCTGCTTCGCTGGGCGATGCAGTTTGTGGCATGGCCACAGCAAGAATCAATTCAAAACATTTCTTGTTCTGGTTCAGGTCTCACACTGCTAAGGAAGTGAAATGGGGAGGAGCCAAGCACCATCCAGAGGATAAGGATGACGGAGGAAAAATGAACCCAAGATCATCATTTAAAGCTTTTCTTGAAGTAGTTAAAAGCAAAAGTTTGCCTTGGGAAGTGTCAGAAATCAATGCTATTCATTCATTACAACTAATAATAAGAGATTCATTCCAAGACACAGAGAACACTGGTCCAAAGACTTTAAATTATGTACAGAAAAGTGACACTGCAATTGGAGGGATGGATGAACTCAGTTCGGTAGCACTTGAAATGGTGAGATTAATTGAGACAGCAACAGTCCCAATTTTTGGGGTTGATTCAGGTGGCATAATTAATGGATGGAATGCAAAAATTGCTGAATTGACAGGTCTACAGGCCAGTGAAGCTATGGGAAAATCCCTGGTAAATGAAATTGTACATGCAGACTCATCTGACGCTTTCAAAAATACTCTAAGCAGAGCCTTGCAAGGTCAGGAGGACAAAAATGTTGAGCTGAAAATAAAACACTTTGGGCATCATCAACGACAGGAAGTTGTATATCTCATGGTCAATGCTTGCACTAGTAGGGACTACACAGATGCTATTGTTGGGGTATGCTTTGTAGCTCAAGACGTGACTTCTGAGAAAGTGGTTCAAGACAAATTCATCAAGTTGGAAGGTGATTACAAAGCTATCATACAGAGTCTCAGTCCACTGATTCCACCCATATTTTCTTGTGATGAGAATGCTTGCTGCTCTGAATGGAATGCAGCCATGGAAAGGCTAACTGGTTGGAAAAGAGATGAAGTCATAGGAAAATTGCTTCCTGGGGAAATTTTTGGAAGTTTTTGTCGACTTAAAGGTCAAGATACATTGactaattttatgattttactaTATCGTGGAATAAGCGGTCAAGATTCTGAGAAGTTACCATTTGGATTTTTTGATAGAAATGGAGAATTTATAGAGACTTATATAACAGCAAACAAGAGAATTGATGCTGGTGGGAATATGCTTGGCTGTTTCTGCTTCTTGCAGATTGTATCACCAGACCTGAATCAGCCCTCTGAAGAAGACAGGCCTAGAGGCAAGGAAAGCATTTCTGAATCCAAGGAGTTGATTTATATACTACAAGAGATGAAGAAACCTTTAAATGGTATACGATTCACACACAAACTTTTGGAGAATACAACTGTCTCAGAAAACCAAAAGCAATTTCTTGACACTAGTGATGCATGTGAAAGACAAATCATGGCAATTATTGAGGATACAAATTTAGGAAGTATTAATGAAGGCAATTTGCAGCTAAACATGGAAGAATTTGTTCTGGGAAATATTTTAGATGCCATTGTCAGTCAAGTCATGATGATGATAAGAGAAAAGAACTTGCAACTGTTTCATGAAATTCCTGATGaaataaaaatgctttcttTATATGGAGACCAAATTAGGCTTCAGGTGGTCTTGTCTGACTTTTTGCTTAATGTAGTCAACCATACACCATCTCCAAATGGCTGGGTAGAAATCAAGATTTCATCTGGTTTAAAGATAATACAGGATGGCAATGACTTTATCCATCTGAAGTTCAGAATGACCCATTCTGGTCAAGGTCTTCCTTCTGATGTTCTTCATGATATGTTCGAAGGAGGGAATCAATGGACTACACAGGAAGGTCTAGGACTATATATGTCCAGGAAAATCCTCAGTAGGATGAATGGTCATGTCCACTACataagagaacaaaataagtgCTATTTCCTCATTGATCTTGAAATtagaacaagaaaagaaaggcAAAGGAATTTGCATGCAGAGACAAAcatgttaaattag 3366 0.4043 MSFGSRGKLRDTSLSTSAESNMNTQRDKTLAQYSADAEILAEFEQSGVSGKSFDYSRMILDPPRLVSEEKMIAYLSKIQRGGLIQPFGCMLAIEEPTFRIIGYSENCFKLLGLERQIDSKQFMGLIGVDATTLFTPSSGASLAKAVASREISLLNPIWVYARATQKPFYAVMHRIDVGVVIDLEPAQSSDPALSLAGAVQSQKLAVRAISRLQSLPGEDIGLLCDTVVEEVQKLTGYDRVMVYKFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQASRFLFKQNRVRMICDCHAKPVRVIQSEELRQPLCLVNSTLRLPHGCHTQYMANMGSIASLVMAIIVNGNDTTRLWGLLVCHHTSPRYVSFPVRYACEFLMQAFGLQLYMEIQLASQMEEKRILKTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALYYEGNCWLLGTTPTEAQVKDIAEWLLSNHGDSTGLTTDSLADAGYPGAASLGDAVCGMATARINSKHFLFWFRSHTAKEVKWGGAKHHPEDKDDGGKMNPRSSFKAFLEVVKSKSLPWEVSEINAIHSLQLIIRDSFQDTENTGPKTLNYVQKSDTAIGGMDELSSVALEMVRLIETATVPIFGVDSGGIINGWNAKIAELTGLQASEAMGKSLVNEIVHADSSDAFKNTLSRALQGQEDKNVELKIKHFGHHQRQEVVYLMVNACTSRDYTDAIVGVCFVAQDVTSEKVVQDKFIKLEGDYKAIIQSLSPLIPPIFSCDENACCSEWNAAMERLTGWKRDEVIGKLLPGEIFGSFCRLKGQDTLTNFMILLYRGISGQDSEKLPFGFFDRNGEFIETYITANKRIDAGGNMLGCFCFLQIVSPDLNQPSEEDRPRGKESISESKELIYILQEMKKPLNGIRFTHKLLENTTVSENQKQFLDTSDACERQIMAIIEDTNLGSINEGNLQLNMEEFVLGNILDAIVSQVMMMIREKNLQLFHEIPDEIKMLSLYGDQIRLQVVLSDFLLNVVNHTPSPNGWVEIKISSGLKIIQDGNDFIHLKFRMTHSGQGLPSDVLHDMFEGGNQWTTQEGLGLYMSRKILSRMNGHVHYIREQNKCYFLIDLEIRTRKERQRNLHAETNMLN 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1749 1121 Pfam GAF domain 219 389 IPR003018 GO:0005515
Ssu1g1749 1121 ProSiteProfiles Histidine kinase domain profile. 886 1105 IPR005467 -
Ssu1g1749 1121 SMART pas_2 737 807 IPR000014 -
Ssu1g1749 1121 SMART pas_2 606 673 IPR000014 -
Ssu1g1749 1121 Coils Coil 665 685 - -
Ssu1g1749 1121 Gene3D PAS domain 77 322 - -
Ssu1g1749 1121 CDD HisKA 890 934 IPR003661 GO:0000155|GO:0007165
Ssu1g1749 1121 Pfam PAS fold 73 186 IPR013654 GO:0006355
Ssu1g1749 1121 CDD PAS 749 857 IPR000014 -
Ssu1g1749 1121 SMART gaf_1 219 399 IPR003018 GO:0005515
Ssu1g1749 1121 SUPERFAMILY PYP-like sensor domain (PAS domain) 610 718 IPR035965 -
Ssu1g1749 1121 Gene3D - 394 567 IPR043150 -
Ssu1g1749 1121 PANTHER TWO-COMPONENT HISTIDINE KINASE 25 1110 - -
Ssu1g1749 1121 SUPERFAMILY PYP-like sensor domain (PAS domain) 78 189 IPR035965 -
Ssu1g1749 1121 Gene3D PAS domain 605 726 - -
Ssu1g1749 1121 ProSiteProfiles PAS repeat profile. 604 675 IPR000014 -
Ssu1g1749 1121 SUPERFAMILY GAF domain-like 397 575 - -
Ssu1g1749 1121 MobiDBLite consensus disorder prediction 1 27 - -
Ssu1g1749 1121 PANTHER PHYTOCHROME E 25 1110 - -
Ssu1g1749 1121 Pfam Phytochrome region 402 577 IPR013515 GO:0006355|GO:0009584
Ssu1g1749 1121 TIGRFAM sensory_box: PAS domain S-box protein 611 729 IPR000014 -
Ssu1g1749 1121 ProSiteProfiles PAC domain profile. 678 734 IPR000700 -
Ssu1g1749 1121 PIRSF Phytochrome_conventional 7 1112 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Ssu1g1749 1121 CDD PAS 615 722 IPR000014 -
Ssu1g1749 1121 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 991 1092 IPR003594 -
Ssu1g1749 1121 SMART HisKA_10 879 944 IPR003661 GO:0000155|GO:0007165
Ssu1g1749 1121 Gene3D PAS domain 751 862 - -
Ssu1g1749 1121 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 947 1097 IPR036890 -
Ssu1g1749 1121 Pfam PAS fold 738 857 IPR013767 GO:0006355
Ssu1g1749 1121 Pfam PAS fold 607 722 IPR013767 GO:0006355
Ssu1g1749 1121 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Ssu1g1749 1121 PRINTS Phytochrome signature 700 717 IPR001294 GO:0006355|GO:0009584
Ssu1g1749 1121 PRINTS Phytochrome signature 504 523 IPR001294 GO:0006355|GO:0009584
Ssu1g1749 1121 PRINTS Phytochrome signature 419 439 IPR001294 GO:0006355|GO:0009584
Ssu1g1749 1121 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Ssu1g1749 1121 PRINTS Phytochrome signature 537 555 IPR001294 GO:0006355|GO:0009584
Ssu1g1749 1121 PRINTS Phytochrome signature 720 740 IPR001294 GO:0006355|GO:0009584
Ssu1g1749 1121 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Ssu1g1749 1121 PRINTS Phytochrome signature 626 641 IPR001294 GO:0006355|GO:0009584
Ssu1g1749 1121 PRINTS Phytochrome signature 607 623 IPR001294 GO:0006355|GO:0009584
Ssu1g1749 1121 Gene3D - 200 550 IPR029016 -
Ssu1g1749 1121 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 379 IPR016132 -
Ssu1g1749 1121 ProSiteProfiles PAS repeat profile. 738 783 IPR000014 -
Ssu1g1749 1121 SUPERFAMILY GAF domain-like 199 385 - -
Ssu1g1749 1121 CDD HATPase_Phy-like 990 1103 IPR044767 -
Ssu1g1749 1121 Gene3D - 922 1097 IPR036890 -
Ssu1g1749 1121 SUPERFAMILY PYP-like sensor domain (PAS domain) 752 854 IPR035965 -
Ssu1g1749 1121 SMART HKATPase_4 991 1105 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1749 Ssu-Chr1 43280355 43285968 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1749 15 1105 Histidine Kinase Gene Family AT4G18130 63.735 0.0 1485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1749 K12123 - gmx:100808192 2096.63