Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1734 atgagtTTGGTAGCAGGTTCGTACGAGAAATTCATCTGGGCCTTCACCCTTCGCTCTCAATCTCTAATCCCTCTCTTCTCCTACCCTTCCCACCTCGCCCCCATCAAAACCGTCGCCGTCTCCGGCTCCGTCGTGGCCTCCGGCGGCTTCGACGACACCATCCACCTCTACAACCTCTCCGCCGCCGCCTCCCTCGGCTCCCTCCACCACCACTCCGGCACCGTCACCGCCCTCGCCTTCTACGCCCCTCCCCACCTCCCCATCCCCCGCAGCCTCGTCTCCGCCGACGCCGCCGGCTCCCTCTCCATCTCCGACGGCGACGGGTTTGTCCACCTCAAGACCCTCCCCATCCACCGCGGCGCCGTGAACGACCTCGCCCTCCACCCCACCGGCAGACTGGCCCTCACCGTCTCCCACGATGAGTGCCTCGCCATGGTTAACCTCCTCAGGGGCCGCCGGAGCTTCTGCTGCCGGCTCGGCAGGGAAGCCAGTTTGGTGAAGTACAACGCCGCCGGCGACCGGTTCTTCATGGCGGCGGAGGAGAAGGTCTCCGTCCACGAGGCTGAGGATGCGCGATTGTTGCTCGAGTTGGAATGCCCGAAGCGTGTTCTCTGCGCCGCGCCTGCTAGGAATGGACTTCTCTATACTGGCGGTGAGGACCGAAACATCACAGCATGGGACATAAAGAGTGGGAAAGTTGCATATTGCTTTGAACAAGCACATACTGCCCGTGTGAAAGGTATTGTTGTGCTCAAAGATAGTGATGGCGCTACAGGGGATGATGATCCTTACCTAGTGTCATCTGCATCATCTGATGGCATTATACGGGTCTGGGATGTGCGAATGGCTGCCACGGAGAAGCCACTAGCTGAATGTGAGACACGGTCAAGACTGACTTGCCTTGCTGGATCATGTCTTAAATTCAAACGACCCCAAACTGGAGAGAGTAAGTCAAAGGTAGAGGATCAAACAATAGAAGGTTAA 984 0.5854 MSLVAGSYEKFIWAFTLRSQSLIPLFSYPSHLAPIKTVAVSGSVVASGGFDDTIHLYNLSAAASLGSLHHHSGTVTALAFYAPPHLPIPRSLVSADAAGSLSISDGDGFVHLKTLPIHRGAVNDLALHPTGRLALTVSHDECLAMVNLLRGRRSFCCRLGREASLVKYNAAGDRFFMAAEEKVSVHEAEDARLLLELECPKRVLCAAPARNGLLYTGGEDRNITAWDIKSGKVAYCFEQAHTARVKGIVVLKDSDGATGDDDPYLVSSASSDGIIRVWDVRMAATEKPLAECETRSRLTCLAGSCLKFKRPQTGESKSKVEDQTIEG 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1734 327 PANTHER PAK1 INTERACTING PROTEIN 1 1 323 - -
Ssu1g1734 327 SUPERFAMILY WD40 repeat-like 3 281 IPR036322 GO:0005515
Ssu1g1734 327 SMART WD40_4 61 105 IPR001680 GO:0005515
Ssu1g1734 327 SMART WD40_4 230 279 IPR001680 GO:0005515
Ssu1g1734 327 SMART WD40_4 21 58 IPR001680 GO:0005515
Ssu1g1734 327 SMART WD40_4 108 147 IPR001680 GO:0005515
Ssu1g1734 327 SMART WD40_4 190 227 IPR001680 GO:0005515
Ssu1g1734 327 Gene3D - 182 312 IPR015943 GO:0005515
Ssu1g1734 327 Gene3D - 2 181 IPR015943 GO:0005515
Ssu1g1734 327 Pfam WD domain, G-beta repeat 259 279 IPR001680 GO:0005515
Ssu1g1734 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 281 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1734 41 281 U-box Gene Family AT2G33340 25.103 4.01e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1734 K14830 - gmx:100777673 496.893