Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1719 ATGAAAACTTCAGTTGTTACCGATGTTAATATAACTTCAGGGGACAGTTATGAGGAACTTATTAAGAAAgAGGTTGAACAGCTTTTGGAACCAGAAGAAAGAGCAATATTGCAACAGAATGTAACTCCTAACTTGGATAAAATATCAACTGCAAAATGGAGCCCGCTGCACACTCTTGTGCTATCAATGCAGATGAGTTGCGCGGATAAGCTTCTTGAAAATGGTGTTGATATTGATTTACCTGATAAGGAAGGTCTTACTGTACTTCATAAGGCAATTATAGGTAAAAAAGAAGCTGTGATTAGCCATGTTTTACGGAGAGGTGCAAGTCCTCATGTTAAGGATAAGGATGGAGCTACTCCACTTCATTATGCAGTTCAAGTTGGTGCCAAGATGATTGTGAAATTATTGATCAGGTACAAGGCTGATGTCAATGTTGAAGATAATGAAGGTTGGACCCCCTTGCACGTTGCCATTCAAAGCAGAAATAGAGATATAGCAAAAATTTTGTTAGTCAATGGTGCTGataagacaagaaaaaataagGACAGAAAAACAGCCCTGGATCTAAGCTTATGTTATGGGAAAGATTTCAAGTCGTATGACCTTGCCAAATTATTGAAGACGGTTCCAGCTGACAGTGATCTATGA 651 0.3763 MKTSVVTDVNITSGDSYEELIKKEVEQLLEPEERAILQQNVTPNLDKISTAKWSPLHTLVLSMQMSCADKLLENGVDIDLPDKEGLTVLHKAIIGKKEAVISHVLRRGASPHVKDKDGATPLHYAVQVGAKMIVKLLIRYKADVNVEDNEGWTPLHVAIQSRNRDIAKILLVNGADKTRKNKDRKTALDLSLCYGKDFKSYDLAKLLKTVPADSDL 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1719 216 ProSiteProfiles Ankyrin repeat profile. 117 149 IPR002110 GO:0005515
Ssu1g1719 216 ProSiteProfiles Ankyrin repeat profile. 51 83 IPR002110 GO:0005515
Ssu1g1719 216 Gene3D - 18 120 IPR036770 -
Ssu1g1719 216 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 18 209 - -
Ssu1g1719 216 SMART ANK_2a 84 113 IPR002110 GO:0005515
Ssu1g1719 216 SMART ANK_2a 51 80 IPR002110 GO:0005515
Ssu1g1719 216 SMART ANK_2a 150 179 IPR002110 GO:0005515
Ssu1g1719 216 SMART ANK_2a 183 216 IPR002110 GO:0005515
Ssu1g1719 216 SMART ANK_2a 117 146 IPR002110 GO:0005515
Ssu1g1719 216 Gene3D - 121 209 IPR036770 -
Ssu1g1719 216 ProSiteProfiles Ankyrin repeat region circular profile. 150 176 - -
Ssu1g1719 216 SUPERFAMILY Ankyrin repeat 43 207 IPR036770 -
Ssu1g1719 216 PANTHER ANKYRIN REPEAT AND SOCS BOX PROTEIN 3 18 209 - -
Ssu1g1719 216 Pfam Ankyrin repeats (3 copies) 103 181 IPR002110 GO:0005515
Ssu1g1719 216 ProSiteProfiles Ankyrin repeat region circular profile. 117 149 - -
Ssu1g1719 216 Pfam Ankyrin repeats (many copies) 53 96 IPR002110 GO:0005515
Ssu1g1719 216 ProSiteProfiles Ankyrin repeat profile. 84 116 IPR002110 GO:0005515
Ssu1g1719 216 ProSiteProfiles Ankyrin repeat profile. 150 182 IPR002110 GO:0005515
Ssu1g1719 216 PRINTS Ankyrin repeat signature 166 180 IPR002110 GO:0005515
Ssu1g1719 216 PRINTS Ankyrin repeat signature 118 133 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1719 Ssu-Chr1 42410665 42412850 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1719 70 176 Ion Channels AT2G25600 28.986 2.11e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1719 - - gmx:100818556 405.216