Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1703 ATGAGGAGCCAGCTTGTGTGTAGTGGGTGTAGGAACATCTTGGTTTACCCTAGAGGAGCATCCAGTGTTTGCTGTGCATTGTGCAACACGATTACCTCTGTTCCTCCTCCGGGAATGGAAATGTCACAACTTTGTTGTAGAGGCTGTAGGACATTGCTAATGTACGCACGTGGTGCTATGAGTGTGAGATGTTCCTGCTGTCACACTCTTAACCATGTACCAGAATCTAATCAAGTCAGCCATGTCCATTGTGCAAACTGCCGGACAACACTCATGTATCCTTGCGGAGCTCCCTCGGTCAAATGTGCAATTTGTCACTATATTACTAATATCAGTATGACCAATGGAAGGCTTCCCATTCCTGTACAAAGATCAAATGGAACAGCCAACTCTGGAACAGTATCTTCTACTTCATCGTCAATGCCTCATTCTCAGAGCCAAACTGTCGTAGTAGAAAATCCTATGTCTGTTGATTCAAGTGGGAAATTGGTGAGCAATGTCGTTGTGGGCGTTACAACAGATAAGAAATGA 531 0.4463 MRSQLVCSGCRNILVYPRGASSVCCALCNTITSVPPPGMEMSQLCCRGCRTLLMYARGAMSVRCSCCHTLNHVPESNQVSHVHCANCRTTLMYPCGAPSVKCAICHYITNISMTNGRLPIPVQRSNGTANSGTVSSTSSSMPHSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1703 176 PANTHER LSD1-LIKE PROTEIN 1 174 - -
Ssu1g1703 176 PANTHER PROTEIN LSD1 1 174 IPR040319 -
Ssu1g1703 176 MobiDBLite consensus disorder prediction 122 146 - -
Ssu1g1703 176 Pfam LSD1 zinc finger 7 31 IPR005735 -
Ssu1g1703 176 Pfam LSD1 zinc finger 46 69 IPR005735 -
Ssu1g1703 176 Pfam LSD1 zinc finger 84 108 IPR005735 -
Ssu1g1703 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 81 110 IPR005735 -
Ssu1g1703 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Ssu1g1703 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 73 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1703 Ssu-Chr1 41894404 41918252 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Ssu1g1703 zf-LSD1 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1703 - - gmx:100776644 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1703 1 41894404 41918252 Ssu1g1703 1 41894404 41918252 ECH