Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1701 ATGGAGCAGTTGAAATTGGCTGCAGATTCTGACGCCAAAGAGGATAACCCTTTGGGGCACAAGACAAAAAGTAACAACGCACTTGAGTCTTCTGACAGtctgagaaataaaaagATATCAGCTCGATGGGATCCGGTTGAAGCATGTCGGCCTATAATTGAAGAAGCACCTGTTTTTTATCCGAATATTGAAgagtTTGAAGACACACTCAGTTACATAGCAAAGATACGGCCCCTAGCTGAACCCCATGGCATATGTAGGATTGTTCCACCAGCTTGCTGGACTCCACCTTGTCCTCTTAAGGAGAAATATCTATGGGAAAATGCTAAATTTCCCACCCGTATCCAACAAATTGATTTGCTTCAAAATAGGGAACCTATGAGGAAAAAAAGTAGGGGAAGGAAACGAAAACGTAGAAAGCACTCCAAAACAGGCACATGTAGGAGGAGGCCTGCCAATGCAGCTTCTGAAGCTAATAATGCTTCTGAGTCTGAAGAGAAATTTGGATTTCAATCAGGGTCAGACTTCACGCTTAGAGACTTTCAGcaatatgctaatttttttaaggaatgcTACTTTGGGTTGAGAGATGCCAATGGAGAGAGAATAGTTAGTGACAGTAACTATCAGAAGAGATGGGAGCCCACTGAGGAGGAAATTGAAGGTGAATACTGGCGAATAATTGAGCAACCAACTGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGTGCACTTGGAAGTGGTTTTCCTAAGGCATCATCCTTAACTAAGAGTGACTCAGATCAATATGCCCTGTCTGGCTGGAATCTGAACAATTTCCCGCGACTGCCAGGTTCTGTACTAAATTATGAAGGAAGTAACATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGtgtttttcatcattttgctgGCATGTTGAGGACCATCATCTCTATTCACTAAACTACTTGCACTGGGGGGACCCAAAAGTATGGTATGGAGTACCTGGAAGCCATGCTCCAGCCCTGGAAAATGTAATGAGGAAGCACTTGCCTGATTTATTTGAGGAACAACCAAATCTACTCAATGAACTGGTTACCCAGTTTTCTCCTTCAATTCTTAAATCTAAGGGAGTGCCTGTGTATCGCACAGTTCAGCATTCTGGGGAATTTGTTATTACCTTTCCAAGGGCATATCATTCTGGCTTCAATTGTGGTTTCAACTGTGCAGAAGCCGTGAATGTGGCTCCTATTGATTGGTTAATGCATGGACAGAATGCTGTTGAGCTTTACAGTTTACAATGCCGTAAGACATCATTGTCACATGACAAGCTGTTATTTGGATCAGCACTGGAAGCTGTACGAGCCCTTGCAGACCTAACTATTGGAAAGGAAActccaaaaaatttgaaatggagaAGTTTCTGTGGGAAAGATGGAGATCTCACCAAGGCAGTTAAGGAAAGGGtaaaaatggaagaagaaaggctTGACTGTCTGCCAACTCATCTTAAGTTGCTGAAAATGAACAGTGACTTCGATTTGCACAAGGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACCTATCTGCTGTGGGTTGTGAGTGCTCTCCTGACAGATATTCTTGTCTTAAGCATACTAATTTGTTCTGCTCGTGCGGAATGGAGAAAAGATTTGTTCTGCTTCGATATACTATAAATGAACTAAATCAATTGCTTGAAGCATTAGAAGGAGAATCACCTGCTATTGAGGTGTGGGCAAATAAAAACTTTGGAATGGTTTCTGCCAATGCCATTAAGGTTTGCACAGATAAACCAGATGTTGAGAAAGATATGTACAAAACCAAGAATTGTGAAGAAAGGGAAAGCTCAACCGGCTGTGCAGGAACGAAGGATAGGTCAAATTTAAACACACCTAGCAGTCCTAATAGTCATATTACTTCAGAGATAATGCAGTCTGAGTCTCACCCTGTAACTTTTAGTGCAGCATACAACAGTATAGATAGTCATAATggcaataataatgataaaaagttgGTCACAGACAATGAAGATAAAGTGGATCAGGCTAGTTCTCTGGATTTGAATCTTGATGTTATCTCtggagaaaatgaaaatcattTGCTGCATATTGCTGATAACCATCATAATAAAGGTGTTTCAGTAGAGGAAAATGTATGCTGTTTAGAGGCCAAAAAGTTAGAAGACAACATGGAACTTGGTGGCGAGGGTAGCCTATCAAACTCATTTTCTGTTCAAAAGACAGATTTTTCATCATGTTCAAGGGGTGTTCGCAATTATTGTACATTTGATGGTGGAAAAATTGTGATGGATCTGCAAATGGATTCAGATTCAGGAAAGCAGCacaacaatctatttaaaaGGGAAGTCATAGACGCCACAGATACTAGTATATCTTTGACAGACGAAAGCTGCTTAGTGCAAATGTTTGGTACTTCTGTCAAACCTGTAAGTTTGGGATCTGTTGTTTATGGAAAGCTCTGGTGTAGTAAGCATGCAATTTATCCAAAAGGATTCAAGAGTCGAGTTAATTTCTTTAGCATTCTTGATCCAGCTAGAATCTGTAGCTATATTTCTGAAGTCATTGATGCTGGATTTCTTGGACCTCTTTTCAAGGTTACAATGGAAGAATGTCCAGGTGAGGCTTTCACAGATACCTCGGCAGATAATTGCTGGGAATCAGTTCTGAAGAGATTACATCATGAAATCATGAGGCGAAGGAGTCTAGGTGCACTAGAACTTCCTCCCTTAGAGCTTCTGAAAAGCATTAACGGTCATAGAATGTTTGGCTTCCTTTTGCCATCCATTATTCAGGCCATCGAAGCTCAAGATCCCAGTCATCTGTGTGTAGAGTACTGGAATCACAAAGTTGCTCCTTCAGGAAGTGTCAATGATAAGTTCACATATGGTTCGAGTAGCTCTTCAGGTAATATCAACACCAAAGTTTTTGGTATTGATTTGATTAAGCAGGAAAAGGATAACATAGAAGGAAATTGTCATTCCCTTGAAGAGATGAAACCAATACTGCAAAGGGCAAATCCTGAGGAGTTGAGCACAATGCATAAGTTACTCAGCTCTGATGCACAGTGCTCTGAGTGGAGAGTGCCATTGATAGCACTGATGGATGAGATCCGGAAAGCTTGTCAATAA 3171 0.3936 MEQLKLAADSDAKEDNPLGHKTKSNNALESSDSLRNKKISARWDPVEACRPIIEEAPVFYPNIEEFEDTLSYIAKIRPLAEPHGICRIVPPACWTPPCPLKEKYLWENAKFPTRIQQIDLLQNREPMRKKSRGRKRKRRKHSKTGTCRRRPANAASEANNASESEEKFGFQSGSDFTLRDFQQYANFFKECYFGLRDANGERIVSDSNYQKRWEPTEEEIEGEYWRIIEQPTDEVEVYYGADLETGALGSGFPKASSLTKSDSDQYALSGWNLNNFPRLPGSVLNYEGSNISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHAPALENVMRKHLPDLFEEQPNLLNELVTQFSPSILKSKGVPVYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPIDWLMHGQNAVELYSLQCRKTSLSHDKLLFGSALEAVRALADLTIGKETPKNLKWRSFCGKDGDLTKAVKERVKMEEERLDCLPTHLKLLKMNSDFDLHKERECFSCFYDLHLSAVGCECSPDRYSCLKHTNLFCSCGMEKRFVLLRYTINELNQLLEALEGESPAIEVWANKNFGMVSANAIKVCTDKPDVEKDMYKTKNCEERESSTGCAGTKDRSNLNTPSSPNSHITSEIMQSESHPVTFSAAYNSIDSHNGNNNDKKLVTDNEDKVDQASSLDLNLDVISGENENHLLHIADNHHNKGVSVEENVCCLEAKKLEDNMELGGEGSLSNSFSVQKTDFSSCSRGVRNYCTFDGGKIVMDLQMDSDSGKQHNNLFKREVIDATDTSISLTDESCLVQMFGTSVKPVSLGSVVYGKLWCSKHAIYPKGFKSRVNFFSILDPARICSYISEVIDAGFLGPLFKVTMEECPGEAFTDTSADNCWESVLKRLHHEIMRRRSLGALELPPLELLKSINGHRMFGFLLPSIIQAIEAQDPSHLCVEYWNHKVAPSGSVNDKFTYGSSSSSGNINTKVFGIDLIKQEKDNIEGNCHSLEEMKPILQRANPEELSTMHKLLSSDAQCSEWRVPLIALMDEIRKACQ 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1701 1056 Pfam F/Y-rich N-terminus 824 868 IPR003888 GO:0005634
Ssu1g1701 1056 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Ssu1g1701 1056 Pfam F/Y rich C-terminus 875 963 IPR003889 GO:0005634
Ssu1g1701 1056 MobiDBLite consensus disorder prediction 128 147 - -
Ssu1g1701 1056 Coils Coil 992 1012 - -
Ssu1g1701 1056 Pfam jmjN domain 57 90 IPR003349 -
Ssu1g1701 1056 SMART fyrc_3 877 969 IPR003889 GO:0005634
Ssu1g1701 1056 Gene3D Cupin 41 415 - -
Ssu1g1701 1056 MobiDBLite consensus disorder prediction 121 166 - -
Ssu1g1701 1056 MobiDBLite consensus disorder prediction 1 32 - -
Ssu1g1701 1056 ProSiteProfiles JmjC domain profile. 265 431 IPR003347 -
Ssu1g1701 1056 MobiDBLite consensus disorder prediction 628 645 - -
Ssu1g1701 1056 ProSiteProfiles FYR domain FYRC motif profile. 873 963 IPR003889 GO:0005634
Ssu1g1701 1056 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Ssu1g1701 1056 Pfam JmjC domain, hydroxylase 298 414 IPR003347 -
Ssu1g1701 1056 MobiDBLite consensus disorder prediction 622 645 - -
Ssu1g1701 1056 MobiDBLite consensus disorder prediction 1 20 - -
Ssu1g1701 1056 SMART cupin_9 265 431 IPR003347 -
Ssu1g1701 1056 SMART JmjN_1 55 96 IPR003349 -
Ssu1g1701 1056 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 10 1055 - -
Ssu1g1701 1056 Gene3D - 818 957 - -
Ssu1g1701 1056 SUPERFAMILY Clavaminate synthase-like 266 451 - -
Ssu1g1701 1056 SMART fyrn_3 827 871 IPR003888 GO:0005634
Ssu1g1701 1056 PANTHER LYSINE-SPECIFIC DEMETHYLASE 10 1055 - -
Ssu1g1701 1056 ProSiteProfiles FYR domain FYRN motif profile. 813 871 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1701 Ssu-Chr1 41742180 41751168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1701 64 1051 JUMONJI Transcription Factor Family AT4G20400 45.946 0.0 814
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Ssu1g1701 JmjC 2.6e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1701 - - gmx:100801775 1884.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1701 1 41742180 41751168 Ssu1g1701 1 41742180 41751168 ECH