Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1694 ATGGAGGCTCAATTAGAGGGGAAAAATCAGTATTTGTATGGACCTGTGGTGCCAGAGATGAAGAGTGTTGGGAAGAGAAGTTTGGAGTGGGATTTGAATGATTGGAAGTGGGATGGGGATCTTTTCACTGCTAGGCAACTGAATTCAGTGCCTTCAGATTGTAGGAGTCGTCAATTGTTCCCTACTGATCCTGAAATTCTTGCAACTGCTGACGCTTCTAACAATTTGTCTTCTGCACATGATGGTGTTAACCTTGGGGAAGGAAAGAGGGAAttggagaagaggaggaggGGTGTTATTGATGAAGGAGGGGTGGAGGTGAATGATGGAGCTGGTTCTCTTAATTTGAACCTTGGGGGTCAAGTATACCCTATCATGGAAGGGGAGGAAAAAAGTGGAAAGAAGACAAAGATAACTGCGAGTTCTTCGAACCGGGCTGTTTGTCAGGTGGAAGATTGTAGGGCCGATCTTAGTAATGCAAAGGATTACCATCGTCGCCACAGAGTTTGTGATATTCATTCTAAGGCTAGCAAGGCACTAGTTGGAAATGTTATGCAGAGATTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAATTTGATGAAGGGAAGAGAAGTTGCCGTAGGCGTCTGGCAGGCCACAATAAGAGAAGGAGGAAAACGCATCCTGATGTTACTGCAGCTAATGGAGGCTCTCTGAACGAAGAAAAGGGCAGTAGCTATCTGTTAATGAGTCTGCTAAGGATACTGTCCAATATGCATTCAAATGGCTCAGATCATATGAGAAACCAGGATGTTCTATCTCATCTGCTGAGGAACCTGGCAAATCTGGCTGGTACAATTAATGGAAGAAATATAGCATCTTTATTGGAGGGATCTCAAGATTTGGTAAAAGCTGGGACATCTGGAGCTGCACAGAATGTTCCAAACACAAATTCAAATGGTCCTGAACCGTCCAGACCTTTCAGTCCTTCTGTCAAGAGGGATGATGGTCCAATCCGTCAGGATCCTCCAGAGTCTATACAATGTGAGATGACTCCTGCTAATGATATGGCTCAAAAATGTATGGCTTCAGGCAGTAATGGAGTAGGAAGTTTAAAATCTCCTTCAGTACCACAGTCCTCAAATGTATTTCTGTCAAGGGATAGCCTTGTTCCCCAATCAGTTGCAGCAGAGACTACAGTTGGAAGAATTGGGTTAAGTAATATTGACCTGAATAATGTATATGATGATGTACAGGATTATGTTGAGAACCCGAGGAATTCTCGCCCTCCTGTGCCTTCAGGGAATGGATCTCTTGATCATCCTTTATGGCTTCTATGTGACTCTCTCAAGTCAAGTCCACCGCAGACAAGTAGAAACTCAGATTCAACCTCTACCCAGTCACCATCTAGTTCCAGTGGAGAAGCTCAgAGTCGCACAGATCGAATTGTTTTCAAACTATTTGGCAAGGCTCCAAATGATTTCCCCCATGCTCTCCGATCACAGATCCTTAACTGGTTATCCCACAGTCCCACAGAGATAGAGAGCTATATAAGGCCAGGCTGTATCATATTAACTATATATCTCCGTCTAGAAAATTCCGCTTGGGAAGAGCTATGCTATAATCTAGGATCCAGCTTGAGAAAGCTTGCTGCATCAAATGATTCTTTCTGGAGATCAGGATGGGTATATACAAGAGTGCAGCACTCTGTAGCTTTTCTGTATAATGGTCAGGTGGTATTGGATGTACCATTGCGCCTCAAAAGCCCACAAAGTTGTCAGATTTTGTGTATTAAACCGCTTGCTGTTTCTGCAAGTTCTAGTGCTCAATTTATTGTGAAAGGATTCAACCTTTTGCTGTCTAACACGAGGTTGCTTTGTGCACTTGAAGGGGAGTATCTGGTACAAGATAGttgttatgatttgattgaCGGTGCTGATGTAGCCAATGGACATAATGAGCTTCAACATCTCAGCTTCTCTTGTCATATACCGAATGTGACTGGAAGAGGGTTTATCGAGGTGGAAGATCATGGTCTTAGTAGCTGTTCCTTTCCTTTCATAGTTGCAGAGCAAGAAATTTGTTCAGAGATCTGTAAGCTGGAGAATGTCATTGAGGCAGCAGAGACTGCTGATGACATCCAGATAAAAACCAAACTACTGGAAGAAAAGACTCGAGCATTGCATTTCATACAAGAAATGGGTTGGCTCCTTCATAGAAGTCGTGTGAAAGTTAGGCTAGGTCCCGTGGCACCTGTTCAAGATCGCTTCCATTTTAATCGGTTCATTTGGCTTGTTGGCTTCTCTATGGACCATGACTGGTGTGCCGTGATGAAAAAACTCTTGGACATTATCTTTGAGGGTATTGTTGATGCAGGAGATCATGCCTCTGTTGAGTTTGCATTGTTAGACATGGGTCTTCTGCACAAAGCTGTAAAGAGAAATTGCAAGCCTATGGTGGAACTACTGTTAAAATTTGTGCCAGTTAAAGCTTCAGATGGCGGAGACAGTAAAGAGAAGCAAGTCAACAAGTCCCCTGAAAGATTCTTGTTTAGACCTGATACTGTTGGGCCTGCCGGGTTGACTCCCCTTCATGTTGCAGCAAGTATGCATGGCTCGGAGAAGGTATTGGATGCATTAACCGATGATCCAGGAATGGTGGGAACTGAGGCATGGAAAAGTGCTAAGGACGCTACAGGTTTGACACCCTATGACTATGCATCCCTGCGGGGCTACTACTCCTACATTCATCTTGTTCAGAGGAAAACAAGCAAGACATGCAAAAGTCAACATGTGCTTGATATCCCAGGCAACATAAAGCAGAAGCAATCAGATGGGCACAGGTCATCGAAAGTTTCAAGTCTGCAGACTGAGAAGATTGAAACAACGGCAATGCCACGTCATTGTGGGCTATGCCAGCACAAGCTGGCATACGGTGGTGTGAGAAGGGCACTGGTTTATAGGCCAGCAATGCTGTCAATGGTGGCCATTGCAgctgtgtgtgtctgtgtggcTTTGCTCTTCAAAAGCTCACCCAAAGTTTATTATGTATTCCAGCCCTTCAGCTGGGAATCATTGGAGTATGGGTCAATCTAA 3081 0.433 MEAQLEGKNQYLYGPVVPEMKSVGKRSLEWDLNDWKWDGDLFTARQLNSVPSDCRSRQLFPTDPEILATADASNNLSSAHDGVNLGEGKRELEKRRRGVIDEGGVEVNDGAGSLNLNLGGQVYPIMEGEEKSGKKTKITASSSNRAVCQVEDCRADLSNAKDYHRRHRVCDIHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDVTAANGGSLNEEKGSSYLLMSLLRILSNMHSNGSDHMRNQDVLSHLLRNLANLAGTINGRNIASLLEGSQDLVKAGTSGAAQNVPNTNSNGPEPSRPFSPSVKRDDGPIRQDPPESIQCEMTPANDMAQKCMASGSNGVGSLKSPSVPQSSNVFLSRDSLVPQSVAAETTVGRIGLSNIDLNNVYDDVQDYVENPRNSRPPVPSGNGSLDHPLWLLCDSLKSSPPQTSRNSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKAPNDFPHALRSQILNWLSHSPTEIESYIRPGCIILTIYLRLENSAWEELCYNLGSSLRKLAASNDSFWRSGWVYTRVQHSVAFLYNGQVVLDVPLRLKSPQSCQILCIKPLAVSASSSAQFIVKGFNLLLSNTRLLCALEGEYLVQDSCYDLIDGADVANGHNELQHLSFSCHIPNVTGRGFIEVEDHGLSSCSFPFIVAEQEICSEICKLENVIEAAETADDIQIKTKLLEEKTRALHFIQEMGWLLHRSRVKVRLGPVAPVQDRFHFNRFIWLVGFSMDHDWCAVMKKLLDIIFEGIVDAGDHASVEFALLDMGLLHKAVKRNCKPMVELLLKFVPVKASDGGDSKEKQVNKSPERFLFRPDTVGPAGLTPLHVAASMHGSEKVLDALTDDPGMVGTEAWKSAKDATGLTPYDYASLRGYYSYIHLVQRKTSKTCKSQHVLDIPGNIKQKQSDGHRSSKVSSLQTEKIETTAMPRHCGLCQHKLAYGGVRRALVYRPAMLSMVAIAAVCVCVALLFKSSPKVYYVFQPFSWESLEYGSI 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1694 1026 MobiDBLite consensus disorder prediction 302 321 - -
Ssu1g1694 1026 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 13 1025 - -
Ssu1g1694 1026 MobiDBLite consensus disorder prediction 213 234 - -
Ssu1g1694 1026 MobiDBLite consensus disorder prediction 302 375 - -
Ssu1g1694 1026 SUPERFAMILY Ankyrin repeat 800 913 IPR036770 -
Ssu1g1694 1026 Gene3D - 139 209 IPR036893 GO:0003677|GO:0005634
Ssu1g1694 1026 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 1025 IPR044817 GO:0003677
Ssu1g1694 1026 MobiDBLite consensus disorder prediction 354 375 - -
Ssu1g1694 1026 Gene3D - 771 949 IPR036770 -
Ssu1g1694 1026 ProSiteProfiles Zinc finger SBP-type profile. 145 222 IPR004333 GO:0003677
Ssu1g1694 1026 MobiDBLite consensus disorder prediction 447 473 - -
Ssu1g1694 1026 SUPERFAMILY SBT domain 146 227 IPR036893 GO:0003677|GO:0005634
Ssu1g1694 1026 Pfam SBP domain 148 221 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1694 Ssu-Chr1 41492741 41502109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1694 1 1025 SBP-box Gene Family AT3G60030 48.031 0.0 830
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ssu1g1694 SBP 1.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1694 - - gmx:100776125 1849.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1694 1 41492741 41502109 Ssu1g1694 1 41492741 41502109 ECH
Ssu6g0485 6 7512415 7519087 Ssu1g1694 1 41492741 41502109 PCT