Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1686 ATGGTGCTTTTGAACCTTGGGAGGAAGGAGGGGCAGGGAATGCGACTTGGGAAATACGAGTTGGGAAAGACTCTTGGGGAAGGCAATTTTGGAAAAGTCAAGTTGGCAAGGGACACTCATTCTGGAAAACTTTTTGCTGTCAAGATCTTTGAGAAGAGCAAGATCATTGACCTCAATAACACTGAGCAGATAAAGAGGGAAATATCCACTTTGAAGCTCCTGAAGCATCCGAACGTCGTTAGATTATACGAGGTCTTGGCtagtaaaaccaaaatttatatgGTACTTGAGTACGTGAATGGAGGAgagttatttgataaaattGCATCCAAAGGTAAACTTAAAGAAGCTGAAGGTAGGAAGCTATTCCAACAGTTGATTGATTGTGTAAGCTTCTGCCACAATAAAGGTGTCTTCCACAGGGATCTCAAGCTGGAGAATGTACTTGTGGATGCCAAAGGGAACATAAAGATAACCGATTTTAACCTTAGTGCTTTGCCCCAGCATTTTAGGGCTGATGGGTTACTGCATACAACCTGTGGAAGTCCCAACTATGTTGCCCCTGAGATTCTTGCCAATAAAGGCTATGATGGTGCAACATCAGATATATGGTCATGTGGTGTTATCTTGTATGTAATTCTAACGGGATATCTTCCTTTTGATGACAGAAATCTTGCAGTTCTCTATCAAAAGATTTTCAAAGGAGATGTTCTGATACCAAGATGGCTATCACCTGGTTCTCAGAACATTATAAAGAGAATGCTTGATCCCAATCCTAAAACCCGGATAACAATGGCTATGATCAAAGAAGACAAATGGTTCAAGGAGGGTTATACTCCTGCAAATCCAGAAGATGAGGAAGAGAATGTGTATTTTGATGATGAAACCTTTTCCATCCATGATGAGTCACTTGAAGCAGATCAGGGGAATCCAAGATCACCAACACTTATCAATGCATTTCAGTTGATAGGGATGTCTTCAAGCCTAGATCTCTCTGGCTTTTTTGAGAAAGAGGATGTCTCTGAGAGGAAGATAAGATTTACATCCACCCATTCACCAAAAGATTTGGTTGAGAGGATAGACGACATTGTAACAAAAATGGGATTCAGAATCCAGAAGAAAAATGGGATGTTGAAAGTGATACAAGAGAGTAAAGAACAGAAAAGTCTAGGTAGCCTCTCAGTTACAGCAGAGGTGATTGAAATAAGTCCATCCTTGTATGTAGTAGAGTTAAGCAAGTCTTGTGGAGATGCCTCTGTATATAGACAGTTGTGCATGAAGTTATCAAATGATTTGGGTGTTCACCCAAAGCAATAG 1317 0.3979 MVLLNLGRKEGQGMRLGKYELGKTLGEGNFGKVKLARDTHSGKLFAVKIFEKSKIIDLNNTEQIKREISTLKLLKHPNVVRLYEVLASKTKIYMVLEYVNGGELFDKIASKGKLKEAEGRKLFQQLIDCVSFCHNKGVFHRDLKLENVLVDAKGNIKITDFNLSALPQHFRADGLLHTTCGSPNYVAPEILANKGYDGATSDIWSCGVILYVILTGYLPFDDRNLAVLYQKIFKGDVLIPRWLSPGSQNIIKRMLDPNPKTRITMAMIKEDKWFKEGYTPANPEDEEENVYFDDETFSIHDESLEADQGNPRSPTLINAFQLIGMSSSLDLSGFFEKEDVSERKIRFTSTHSPKDLVERIDDIVTKMGFRIQKKNGMLKVIQESKEQKSLGSLSVTAEVIEISPSLYVVELSKSCGDASVYRQLCMKLSNDLGVHPKQ 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1686 438 PANTHER - 11 435 - -
Ssu1g1686 438 PANTHER CBL-INTERACTING PROTEIN KINASE 21 11 435 - -
Ssu1g1686 438 ProSiteProfiles Protein kinase domain profile. 19 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1686 438 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Ssu1g1686 438 SMART serkin_6 19 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1686 438 Pfam NAF domain 314 373 IPR004041 GO:0007165
Ssu1g1686 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Ssu1g1686 438 Pfam Protein kinase domain 19 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1686 438 CDD CIPK_C 318 429 - -
Ssu1g1686 438 Gene3D Kinase associated domain 1, KA1 316 434 - -
Ssu1g1686 438 ProSiteProfiles NAF domain profile. 312 336 IPR018451 GO:0007165
Ssu1g1686 438 SUPERFAMILY Protein kinase-like (PK-like) 16 309 IPR011009 -
Ssu1g1686 438 Gene3D Transferase(Phosphotransferase) domain 1 12 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1686 Ssu-Chr1 41150268 41156434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1686 82 438 CBL-interacting serine-threonine protein kinases AT3G17510 69.359 2.75e-171 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu1g1686 Pkinase 4.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1686 K07198 - gmx:100815660 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1686 1 41150268 41156434 Ssu1g1686 1 41150268 41156434 ECH
Ssu6g0496 6 7649281 7654587 Ssu1g1686 1 41150268 41156434 PCT