Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1682 ATGGAAGAAAAAGCTGCGTTAACAAAATTGCTGGAAGATGAGGAAAGGCCATGTGATAATAATACAAAAGCACGGAACGGGACCGATGAACCCTCGTTTCATAATACTATGGGATCTACTCTTTTCAGCTTGAGCCTGAATAACTCAGGACAGCCCCTTACCCAAATGGACATGTTGCGAATCAAGCTTGAGGAAGCGAAGAAGgagaatgaaattttaaagactatgCTACATCAGTTTAGTGAACACTGCACTGCTGTTCAGAATCGCATACTTTTTGAGCTGCAGCAGCGTCAACTATCTTCATCACATCGTAATAATAATCATGACTCGCAGGGAAATAGACAAGATGCGGAGAAACCAATGTTACACACCCGACAGTTTTTGAATATTGGTGAGTCTTCACGTTTAGACGGCAACACAGAAGGATGTGCCTCAGCGGAAaacattgaaaagaaaatattaggcAGAAACCTTTCATGTGATAAGTACAATGTTGAGGGTGAAATCAACAGCCAAATAACATCGCATGAAGCAAAACACACAGAAGATCAAGCGTCTGAGGTTACTTGCAGGAGAGCCAAAGTATCCATAAGAGCACGATCAGATTTTTCTTTGATCAGAGATGGGTGTCAATGGAGAAAGTACGGACAAAAGACAGCGAAAGGCAACCCTTGTCCCCGGGCCTACTATCGTTGCAGCATGGGACCTGCATGTCCAGTTCGTAAGCAGGTGCAAAGGTGTTTTAAGGATGAGACTGTTCTCATCACAACCTATGAAGGGAACCATAATCATCCACTTCCACCAGCAGCCAGACCTTTGGCAAGCTCAACATCAGCTGCATTGAACATGTTCCTTTCTGGCTCAATCTCAAGCTCACATGGCAGCACCACTCTATCAAACTCACACCTCTTCTCTTCACTATCTAGCATTGCCCCAACTGCTGTGGCTACTTTCTCCCAATCTGCAACATGTCCCACAGTAATACTGGACTTAACCCAGCCCCTTAATAACTATCTGCAATTCCAAAGGGCCACCACTTCACAGGACCACAAACAACCATTGTTCCCTCTGCCAATGCATGGCCACCCTCAAAATTCTGAAGGGTTGCACTTGTGTAATTCTAAGCTTCCAACCATGTTAACCCCAGAGAAAAACCTTGCCTTGGTGGATGTTGTCAGTGAAGCTATAGCCAAAGATCCTTCTCTCAAGGCAGCATTGTTTTCAGCCATTTCCTCACTCACTGGAGATCCTCATCAGAACATCAATAACCACAGCCAACACAATAAGGGTAGTAGTGGTTATGACCCTTGTTCTAAGATGCCTGCAATACCACCTCATCAGCCTTACACTACTCAGttgatttag 1368 0.432 MEEKAALTKLLEDEERPCDNNTKARNGTDEPSFHNTMGSTLFSLSLNNSGQPLTQMDMLRIKLEEAKKENEILKTMLHQFSEHCTAVQNRILFELQQRQLSSSHRNNNHDSQGNRQDAEKPMLHTRQFLNIGESSRLDGNTEGCASAENIEKKILGRNLSCDKYNVEGEINSQITSHEAKHTEDQASEVTCRRAKVSIRARSDFSLIRDGCQWRKYGQKTAKGNPCPRAYYRCSMGPACPVRKQVQRCFKDETVLITTYEGNHNHPLPPAARPLASSTSAALNMFLSGSISSSHGSTTLSNSHLFSSLSSIAPTAVATFSQSATCPTVILDLTQPLNNYLQFQRATTSQDHKQPLFPLPMHGHPQNSEGLHLCNSKLPTMLTPEKNLALVDVVSEAIAKDPSLKAALFSAISSLTGDPHQNINNHSQHNKGSSGYDPCSKMPAIPPHQPYTTQLI 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1682 455 MobiDBLite consensus disorder prediction 13 36 - -
Ssu1g1682 455 SMART WRKY_cls 207 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g1682 455 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 427 IPR044810 GO:0003700
Ssu1g1682 455 Coils Coil 56 83 - -
Ssu1g1682 455 Gene3D WRKY domain 192 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g1682 455 MobiDBLite consensus disorder prediction 99 121 - -
Ssu1g1682 455 MobiDBLite consensus disorder prediction 417 434 - -
Ssu1g1682 455 Pfam WRKY DNA -binding domain 209 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g1682 455 MobiDBLite consensus disorder prediction 417 455 - -
Ssu1g1682 455 ProSiteProfiles WRKY domain profile. 202 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g1682 455 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 427 - -
Ssu1g1682 455 SUPERFAMILY WRKY DNA-binding domain 201 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1682 Ssu-Chr1 40998527 41003890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1682 59 414 WRKY Transcription Factor Family AT4G04450 36.409 1.44e-61 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu1g1682 WRKY 6.3e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1682 - - gmx:100781603 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1682 1 40998527 41003890 Ssu6g0512 6 7891543 7899061 PCT