Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1671 ATGGGTGCTGGTGTCACTGTCAAGTCCGAGGTTTTGGGTCTAGAATCTTCTCCTCCTCCTGTGGAGAAACCCGAAGGAGTTTGCTCCAACACGGAGGAACACCACCTGGTCCGGCCCAATATGCCTGATGGGTCAACCATGCTTCTCTCATCCAACAAgtCAGTGCCAGCATCTGGACTTAATGCAGCGATTCCTAGTGCAAACCAGCTTACCATCTTCTATAATGGCAGTGTTTGTGTCTATGATGGAATCCCTGCAGAAAAGGTGCATGAAATAATGCTTATTGCTGCTGCTGCCGCCAAGTCTACTGAAATGAAGAAGATTGGGACGCAATCTACTCTCATTTCACCCGTTCCCACAAGGCCTTCTTCACCAAATATTGCTTCCTCGCAGAAGAGCTCCATCTGCAGGCTGCAAGCTGAATTTCCAATAGCACGCAGGCATTCACTTCAAAGGTTTCTTGAGAAGCGGCGAGACAGgCTGGGTAGCAAAGCTCCTTATCCTTCCTCATCAACTACAAAAGTGGCTGACAATATAGAGAACAACTTCTGTGCTGACAATGCACCAGAACTGATTTCCTTGAATCGATCAGAGGAGGAATCTCAGCCAACTGTTTCTGCCTCTTGA 627 0.4769 MGAGVTVKSEVLGLESSPPPVEKPEGVCSNTEEHHLVRPNMPDGSTMLLSSNKSVPASGLNAAIPSANQLTIFYNGSVCVYDGIPAEKVHEIMLIAAAAAKSTEMKKIGTQSTLISPVPTRPSSPNIASSQKSSICRLQAEFPIARRHSLQRFLEKRRDRLGSKAPYPSSSTTKVADNIENNFCADNAPELISLNRSEEESQPTVSAS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1671 208 Pfam Jas motif 143 167 IPR018467 -
Ssu1g1671 208 ProSiteProfiles Tify domain profile. 63 98 IPR010399 -
Ssu1g1671 208 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 42 186 IPR040390 -
Ssu1g1671 208 MobiDBLite consensus disorder prediction 1 26 - -
Ssu1g1671 208 SMART tify_2 63 98 IPR010399 -
Ssu1g1671 208 PANTHER DIVERGENT CCT MOTIF PROTEIN 42 186 - -
Ssu1g1671 208 Pfam tify domain 65 97 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1671 Ssu-Chr1 40641677 40645875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1671 68 174 Tify Gene Family AT5G20900 53.279 2.15e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Ssu1g1671 tify 1.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1671 K13464 - gmx:100306045 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0526 6 8122656 8126084 Ssu1g1671 1 40641677 40645875 PCT