Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1664 ATGGCTCTTTCTTCAACGAAAGAGTTATCTCGAATAGCAGTAACGCTAACACCCACTGTCACACTCATCTTCTTGTCCGTGCTGTTTCCGAGCCTGTGCACCGCACTTGGTAACACTAACACCGTGGGATCGGAGTTGCTGAAGGTTTCTCCTTCTGAATTTGCCGGGACAGTGAGAACTGTCGTTGACGTGTTGCAAGATGTTACCTCTATTCTCTCCGAGTTCGGTTCTAGCTTCGGCGATTCGCGTCTTTCTAACGCCGTTTCTGACTGCCTCGACTTGCTTGACCTGTCCTCTGATGAGCTCGATTGGTCGGTCTCTGCCACCCAGAGCCCACAAGGGAAGCATAACAGTACAGGGAACCTGAGTTCAGATTTGAGGACATGGCTAAGTGCGGCACTTGCGAATCAAGACACATGCATGGACGGTTTCGAAGGTACCAATGGCATTGTGAAGGGTTTAGTGTCCACTGGGCTAGGCCAAGTGATGACATTGCTCCAACAACTTCTCACTCAGGTGAACCCTGTTTCGGAtcacttctctttctcttccacACAACAGGGCCAATTTCCCTCGTGGGTTAAACCAGGGGACAGGAAGCTGCTTCAGGCAAATGGGGCGCACGTGGATGCCGTGGTGGCCACAGATGGGACTGGGAACTACACCAAGGTGATAGATGCCGTGTTGGCTGCGCCTGATTACAGTATGAAGCGCTTTGTGATATACGTAAAGAAGGGGGTTTACTATGAGAACGTTGAGATCAAGAAGAAGAAGTGGAACCTCATGATGATTGGAGATGGCATGGATGCCACTGTTATCTCCGGTAACCGGAGCTTCATCGACGGTTGGACCACGTTCCGGTCAGCTACTTTTGCAGTGAGTGGCAGAGGATTCATAGCACGAGACATAACCTTCCAGAACACGGCGGGACCAGAGAAGCACCAAGCAGTGGCACTAAGATCAGACTCTGACCTCTCTGTATTCTACCGATGTGGCATTTTGGGTTACCAAGACAGCCTCTATACTCACACCATGCGCCAATTCTATAGAGAATGCAAAATCAGTGGCACCGTGGATTTCATTTTTGGTGATGCCACTGCTCTATTCCAAAACTGCCGAATAGAAGCCAAAAAAGGGTTACCAGATCAAAAGAACACCATCACAGCTCATGGGAGAAAAACCCCTGATGAACCAACAGGTTTCTCCATCCAATTTTGCAACATTTCTGCTGATTCTGTCCTTGTGCCCCGGGTTAATTCCACCCACACATACCTTGGCAGACCTTGGAAACCATATTCTAGGACAATTTTTATGCAATCTTACATTAGTGATGTGTTGAGGCCAGAAGGGTGGTTGGAGTGGAATGGGGACTTTGCTTTGGACACGTTGTACTATGCAGAGTACATGAATTATGGGCCAGGTGCAGGACTAGCCGACCGGGTGAAATGGTCAGGGTACCATGTGATGAATGATTCTAGCCAGGCTAGTAATTTCACAGTAACACAATTTATTGAGGGGAATCTTTGGTTGCCTTCAACGGGTGTAACGTTCACGGCTGGATTGGGCGTATGA 1572 0.4822 MALSSTKELSRIAVTLTPTVTLIFLSVLFPSLCTALGNTNTVGSELLKVSPSEFAGTVRTVVDVLQDVTSILSEFGSSFGDSRLSNAVSDCLDLLDLSSDELDWSVSATQSPQGKHNSTGNLSSDLRTWLSAALANQDTCMDGFEGTNGIVKGLVSTGLGQVMTLLQQLLTQVNPVSDHFSFSSTQQGQFPSWVKPGDRKLLQANGAHVDAVVATDGTGNYTKVIDAVLAAPDYSMKRFVIYVKKGVYYENVEIKKKKWNLMMIGDGMDATVISGNRSFIDGWTTFRSATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCGILGYQDSLYTHTMRQFYRECKISGTVDFIFGDATALFQNCRIEAKKGLPDQKNTITAHGRKTPDEPTGFSIQFCNISADSVLVPRVNSTHTYLGRPWKPYSRTIFMQSYISDVLRPEGWLEWNGDFALDTLYYAEYMNYGPGAGLADRVKWSGYHVMNDSSQASNFTVTQFIEGNLWLPSTGVTFTAGLGV 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1664 523 SUPERFAMILY Pectin lyase-like 208 520 IPR011050 -
Ssu1g1664 523 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 166 IPR035513 -
Ssu1g1664 523 TIGRFAM PME_inhib: pectinesterase inhibitor domain 57 156 IPR006501 GO:0004857
Ssu1g1664 523 ProSitePatterns Pectinesterase signature 2. 354 363 IPR033131 -
Ssu1g1664 523 Pfam Pectinesterase 210 507 IPR000070 GO:0030599|GO:0042545
Ssu1g1664 523 Gene3D - 208 523 IPR012334 -
Ssu1g1664 523 SMART PMEI_2 18 172 IPR006501 GO:0004857
Ssu1g1664 523 CDD PMEI-like_4 15 177 - -
Ssu1g1664 523 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 48 521 - -
Ssu1g1664 523 Pfam Plant invertase/pectin methylesterase inhibitor 46 160 IPR006501 GO:0004857
Ssu1g1664 523 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 176 IPR035513 -
Ssu1g1664 523 PANTHER PECTINESTERASE 48 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1664 Ssu-Chr1 40466876 40472020 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1664 21 521 Carbohydrate Esterase AT3G43270 65.259 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1664 K01051 - gmx:100777500 902.508