Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1663 ATGGTTCTTTTTCCGACAAAACTGCTGACTCCAATTTCCACCGACACATTCATCTTCTTCTTGTTGGTGGTGACTCCGTGCGCCCTGTTTGTTCGCTCTGATTTCGCAGGACTCGAGAGCCTGAAAGTTTCTCCTTCTGAATTCATAGGCTCCGTGAGAACAGTAGGTGATGTTTTGCAAAACGTTACCTCCACTCTCGAGTCTGAGTTCAACAATGTCAATAATGACTTTCGTGTTTCTGACACCATTTCCGCGTGTCTCGATTTATTAGACTTGTCAGCTGATGAGCTCAGCTGGTCCATTTCCGCTGTTCAAAGTCCCCAAGCCGCTGGAATTGACCAAGCGAAGTGGTTGCTCCAAAAGCTGGTGAGCCAGGTGAAGCCTGTTTTGGATGATTTCACTAGAAGTAGGGGCAAATTTCCTTCATGGGTTGAAGCAGGGGACAAGATGCTGCTGCAGGGAAATGGGGTGCATGCGGATGCTGTAGTTGCTGCTGATGGGACAGCTAATTTTACTAAGGTGAGGGATGCTGTGCAAGCAGCACCTGAGTATACCATGAAACGGTATGTGATATACATAAAGAAGGGTGTTTACAATGAGAACGTTGAGATTAATAAGAAGAAGTGGAACCTCGTGATGATTGGAGACGGTATCGATGCCACCGTTATCTCCGGTAACCTGAgttatagtaaaaatttgaCCACATTCAAGACAGCTACCTTTGCTGTCAATGGGAGAGGTTTCATAGCACGAGACATTTCCTTCATAAACACTGCAGGGCCCGAAAGGAATCAAGCTGTTGCGCTAAGATCAGACTCTGACCTCTCTGTGTTCTACCGATGTGGGATTTTTGGCTACCAAGACAGTCTCTATGCCCACTCCTTGCGCCAATTCTACAGAGAATGCAGAATAAGTGGCACCGTGGATTTCATATTTGGGCATGCCTGTGCAGTCCAGGCTTTAAACTTCACTGTGGCCAATCTGATTTTGGGGGATCTATGGCTACCTTCAACCGGTGTAACGTTCACTCCTGGATTTGGGGATTAA 1047 0.4623 MVLFPTKLLTPISTDTFIFFLLVVTPCALFVRSDFAGLESLKVSPSEFIGSVRTVGDVLQNVTSTLESEFNNVNNDFRVSDTISACLDLLDLSADELSWSISAVQSPQAAGIDQAKWLLQKLVSQVKPVLDDFTRSRGKFPSWVEAGDKMLLQGNGVHADAVVAADGTANFTKVRDAVQAAPEYTMKRYVIYIKKGVYNENVEINKKKWNLVMIGDGIDATVISGNLSYSKNLTTFKTATFAVNGRGFIARDISFINTAGPERNQAVALRSDSDLSVFYRCGIFGYQDSLYAHSLRQFYRECRISGTVDFIFGHACAVQALNFTVANLILGDLWLPSTGVTFTPGFGD 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1663 348 ProSitePatterns Pectinesterase signature 2. 304 313 IPR033131 -
Ssu1g1663 348 CDD PMEI-like_4 16 118 - -
Ssu1g1663 348 Pfam Pectinesterase 160 318 IPR000070 GO:0030599|GO:0042545
Ssu1g1663 348 Gene3D - 120 324 IPR012334 -
Ssu1g1663 348 SUPERFAMILY Pectin lyase-like 157 319 IPR011050 -
Ssu1g1663 348 ProSitePatterns Pectinesterase signature 1. 185 204 IPR018040 -
Ssu1g1663 348 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 42 109 - -
Ssu1g1663 348 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 121 318 - -
Ssu1g1663 348 PANTHER PECTINESTERASE 42 109 - -
Ssu1g1663 348 PANTHER PECTINESTERASE 121 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1663 Ssu-Chr1 40442664 40445631 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1663 12 318 Carbohydrate Esterase AT3G43270 47.283 7.38e-106 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1663 K01051 - gmx:100810815 399.053