Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu1g1662 | atggcAGGGAATCATAACGGTACTGGGAATCTGAGCTCTGATTTGAGGACATGGCTTAGCGCTGCACTTGCGAATATAGATACATGCATAGACGGTTTTGAAGGTACAAGTGGGAACGTGCAGGGTTCAATAGCCACTGGAATTGACCAAGCGAAGTGGTTGCTCCAAAAGCTGGTGAGCCAGGTGAAGCCTGTTTTGGATGATTTCACTAGAAGTAGGGGCAAATTTCCTTCATGGGTTGAAGCAGGGGAAAAGATGCTACTGCAGGGAAATGGGGTGCGTGCGGATGCTGTAGTTGCTGCTGATGGGACAGCTAATTTTACTAAGGTGATGGATGCCGTGCAAGCAGCACCTGAGTACACCATGAAACGGTATGTGATATACATAAAGAAGGGTGTTTACAATGAGAACGTTGAGATTAATAAGAAGAAGTGGAACCTCGTGATGATTGGAGACGGTATCGATGCAACTGTTATCTCCGGTAACCTGAGTTATAAAAATTTGACCACATTCAAGACAGCTACCTTTGCTGTCAATGGAAGAGGTTTCATAGCACGAGACATTTCCTTCATAAACACTGCAGGGCCCGAAAGGAATCAAGCTGTTGCGCTAAGATCAGACTCTGACCTCTCTGTGTTCTACCGATGTGGGATTTTTTGCTACCAAGACAGCCTCTATGCCCACTCTTGCGCCAATTCTACAGAGAATGCAGAATAA | 717 | 0.4533 | MAGNHNGTGNLSSDLRTWLSAALANIDTCIDGFEGTSGNVQGSIATGIDQAKWLLQKLVSQVKPVLDDFTRSRGKFPSWVEAGEKMLLQGNGVRADAVVAADGTANFTKVMDAVQAAPEYTMKRYVIYIKKGVYNENVEINKKKWNLVMIGDGIDATVISGNLSYKNLTTFKTATFAVNGRGFIARDISFINTAGPERNQAVALRSDSDLSVFYRCGIFCYQDSLYAHSCANSTENAE | 238 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu1g1662 | 238 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 13 | 50 | IPR035513 | - | |
| Ssu1g1662 | 238 | Pfam | Pectinesterase | 96 | 229 | IPR000070 | GO:0030599|GO:0042545 | |
| Ssu1g1662 | 238 | ProSitePatterns | Pectinesterase signature 1. | 121 | 140 | IPR018040 | - | |
| Ssu1g1662 | 238 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 2 | 62 | IPR035513 | - | |
| Ssu1g1662 | 238 | PANTHER | PECTINESTERASE | 72 | 230 | - | - | |
| Ssu1g1662 | 238 | PANTHER | PECTINESTERASE | 4 | 64 | - | - | |
| Ssu1g1662 | 238 | PANTHER | PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED | 72 | 230 | - | - | |
| Ssu1g1662 | 238 | PANTHER | PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED | 4 | 64 | - | - | |
| Ssu1g1662 | 238 | Pfam | Plant invertase/pectin methylesterase inhibitor | 12 | 60 | IPR006501 | GO:0004857 | |
| Ssu1g1662 | 238 | Gene3D | - | 63 | 237 | IPR012334 | - | |
| Ssu1g1662 | 238 | SUPERFAMILY | Pectin lyase-like | 93 | 230 | IPR011050 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu1g1662 | Ssu-Chr1 | 40397811 | 40399438 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu1g1662 | 3 | 229 | Carbohydrate Esterase | AT3G43270 | 57.025 | 9.83e-91 | 275 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu1g1662 | K01051 | - | gmx:100810815 | 355.525 |