Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1661 atGGCTTATTTATCTCGTAGACTCTTCTTCCTTCTGTTTGCGATCTTCTTTTCACACACTTATGCTGTCAACTCTTCCAATGCTTCCACAACACTTCATACCAATCTCTCTTCCTTAAGGTCTTTCTGCACAACCACCCCATACCCAGAAGTTTGTTTCAATTCATTGAAGCTATCCATCTCAATAAACATAAGTCCAAACATTATCAACTACCTCCTTCAGTCCCTCCAAGTAGCAATATCTGAAGCCACAAAGCTGTCAAATCTCTTCCACAATGTTGGACACTCAAACATCGTAGAGAAGCAAAGAGGAGCAGTTCAAGACTGCCGGGAACTCCACCAATCCACATTGGCTTCTTTGAAAAGATCACTATCAGGGATCCGTTCCTCCAACTCCAGGAACATAGTTGATGCAAGAGCCTACCTCAGTGCAGCCGTCACCAACAAGAACACATGTCTAGAAGGCCTAGATTCTGCTTCTGGTACCATGAAGCCAGTTCTGATGAAATCTGTGATCAACACTTACAAGCATGTCAGTAACTCTCTTTCAATGCTCTCTAAGCCAGGGATGGGGGCTCCCAAAGGCCAAAAGAGCCAACCTTTGATGGGTGATTCAAAGTGGCCATCAAGCAGTGACCATGGCCTCTTGCAAGACTCAGATGGGGAAGAATATGACCCAAATGAAGTGCTTGTTGTGGCTGCAGATGGAACTGGGAACTTTAGCACCATCACTGAGGCCGTCAACTTTGCCTCAAATAACAGCATGGATAGGACAGTGATCTATATCAAAGAAGGGATTTACGAGGAAAATGTGGAAATCCCAAGCTATAAGACCAACATTGTGATGGTTGGCGATGGAAGTGATGTCACTGTCATAACTGGTAACAGAAGCGTTGGTGATGGCTGGACCACTTTCAGATCTGCAACTCTAGCGGTCTCTGGTGATGGCTTTCTAGCTCGTGATATAGCGTTTGTGAACAGCGCAGGGCCAGAGAAGCATCAAGCAGTAGCCTTGAGGGTAAATGCAGACCTAACTGCTTTTTACAGGTGTGCAATTTATGGTTACCAAGACACTTTATATGTTCACTCCTTTAGACAATTCTATAGAGAGTGTGACATTTATGGGACCATAGATTTCGTATTTGGAAATGCAGTAGCGATTCTACAAGAATGTAACATTATATCCAGAAAGCCATTGCCTGGCCAATTCACTGTCATCACTGCACAGTCCAGAGATAGCCCTGACGAGGACACTGGCATCTCAATCCAGAACTGCTCAATCATAGCTACCCTTGATCTGTATTCCAACTCTAGTAGCCTCAAGAGCTACCTTGGGAGGCCATGGAGGGTCTATTCTCGCACTGTTTACCTTGAGTCCTACATTGATGACTTCATTGACCCAAGGGGCTGGACAAAGTGGTCTAATGAGCAAGGATTGGACACACTGTATTACGGAGAGTATGACAATTATGGACCTGGTTCCAGCACAGATAATCGTGTAGAATGGCTTGGGTACCATTTGATGGATTATGAAGATGCCTATAATTTCACAGTTTCGGAGTTCATCAATGGAGATGAACGGCGAAGAAACGAGCAGAGAAAAAAGCTGAGGAAGAAGATCCTCATCGGCGTAGTCTCTGCCGTTCTCCTCGCGTGCATAGTTGGTGCTGCAGCGTTTGTCGTCGTGCGAAGGACAGGCCGCGGCTCCGACACCAAGAATGCAACTCCCGTGGAACAAACCACCGCACCACGCGTGGGCCAAAACTCCAGGCTCGTGCAAATGATATGCGGCGCCGCGGAATACAAAAGCAAATGTGAAAGCACCCTTGGTGAAGTCCTAAAGAAGGACCCCAAATTGGAACAACCCAGGGACCTTGTCTTGGTGTCTATGCAACTTGCTGACAATGAGGTTAACAAGGCCCTCAACCAAATCTCCCAAATGAACTTTGCATCGGAACAAGAGAAAGGCGCGTACGAAGATTGCAAGCAACTGTTCAAGGACGCCAAGGAAGAGCTTGGGTTCTCAATCACCGAAGTCGGCGAAAACGATGTGGGCAGCCTCTCGTCGAAGGCTCCCGAACTGAACAACTGGCTCAGTGCAGTGATGTCTTACCAACAAACCTGCATTGATGGGTTTCCCGAAGGGGAGTTGAAGAATAAGTTGACGAGTACCTTCAGTGAGTCGAAGGAACTTGTTAGCAATTCCCTTGCGGTTGTGGCGCAGGTGTCTTCGTTCTTTGCTATATTCAAAGGCGCTGGGAATATTCACCTTCCGTGGTTGAACAATGGTGATGCACCTGCACCTGCACCTGCTTCTGGGCTTGGTTCTGATCCTTTTTCTGGTTTTGCTTTTGCTCCTGGTCTTTCTCCTGCTCCTGGTTCCGCTCCTGGCCCGGTTCCTTCTTGGGCTGACCTGGTTCCTACATGGACTGGCTCGGTTCCTACTTGGGCTGGCCCTTCTGAGTTGAAGGGATCAGATGAGAAACTCACACCTAACGTCACGGTGGCACAAGATGGCAGCGGAAAATTCAAAACCATCTCAGAAGCTTTGGCTGCCATCCCAGAAACATTTGTGGGCAGGTACGTGGTTTATGTTAAAGAAGGAGTATACGATGAGACAGTGACAGTGACAAAGAAAATGGTAAACCTAACCATGTTTGGCGATGGAATGCAAAAGAGTATCATCACTGGCAACAAAAATTTTGTGGATGGAGTCAGGACTTTCCAAACTGCATCATTTGTGGTGCTTGGAGATGGATTCCTGGGCAAAGATATGGGATTCAGAAACACTGCTGGTGCAGAGAAGCATCAAGCAGTGGCTGCAAGAGTGCAAGCAGATCAGGCAGTGTTTTTCAACTGTGCCTTTGAGGGCTACCAAGACACTCTATACGCCCAAACTCACAGACAGTTCTACCGCGACTGTGTCATTTCAGGCACCATTGACTTCATCTTTGGTGATGCTTCAGCTGTGTTCCAAAACTGCACCATTGTATTCAGAAAACCACTGGGCAACCAGCAAAACATTGTGACTGCTCAAGGGAGAATCGACAAGCGAGAGAACACTGGCTTTGTTCTGCAGAAGTGTGTGATCAAAGCAGATGATCAATTGGTTGCTGCGAAGGAAAATATCAAGAACTACCTCGGAAGGCCTTGGAAGGAGTACTCAAGAACCATCATCATGGAAACTGAAATTGGGGACTTAATTCACCCTGATGGGTGGCTACCTTGGGAAGGGAACTTTGCACTAAACACACTGTATTATGGTGAGTACAACAACAATGGAGTTGGTGCCAACACCAATGCCAGGGTCAGTTGGCCTGGTCGCAAAGTCATTAATAAGGATGAGGCTACCAGGTACACGGTTGAGGCTTTCTTGCAAGGGACATGGATCAATGGCACAGGTGTACCAGCAAAACTGGGCTTGTACAATTAA 3432 0.4691 MAYLSRRLFFLLFAIFFSHTYAVNSSNASTTLHTNLSSLRSFCTTTPYPEVCFNSLKLSISINISPNIINYLLQSLQVAISEATKLSNLFHNVGHSNIVEKQRGAVQDCRELHQSTLASLKRSLSGIRSSNSRNIVDARAYLSAAVTNKNTCLEGLDSASGTMKPVLMKSVINTYKHVSNSLSMLSKPGMGAPKGQKSQPLMGDSKWPSSSDHGLLQDSDGEEYDPNEVLVVAADGTGNFSTITEAVNFASNNSMDRTVIYIKEGIYEENVEIPSYKTNIVMVGDGSDVTVITGNRSVGDGWTTFRSATLAVSGDGFLARDIAFVNSAGPEKHQAVALRVNADLTAFYRCAIYGYQDTLYVHSFRQFYRECDIYGTIDFVFGNAVAILQECNIISRKPLPGQFTVITAQSRDSPDEDTGISIQNCSIIATLDLYSNSSSLKSYLGRPWRVYSRTVYLESYIDDFIDPRGWTKWSNEQGLDTLYYGEYDNYGPGSSTDNRVEWLGYHLMDYEDAYNFTVSEFINGDERRRNEQRKKLRKKILIGVVSAVLLACIVGAAAFVVVRRTGRGSDTKNATPVEQTTAPRVGQNSRLVQMICGAAEYKSKCESTLGEVLKKDPKLEQPRDLVLVSMQLADNEVNKALNQISQMNFASEQEKGAYEDCKQLFKDAKEELGFSITEVGENDVGSLSSKAPELNNWLSAVMSYQQTCIDGFPEGELKNKLTSTFSESKELVSNSLAVVAQVSSFFAIFKGAGNIHLPWLNNGDAPAPAPASGLGSDPFSGFAFAPGLSPAPGSAPGPVPSWADLVPTWTGSVPTWAGPSELKGSDEKLTPNVTVAQDGSGKFKTISEALAAIPETFVGRYVVYVKEGVYDETVTVTKKMVNLTMFGDGMQKSIITGNKNFVDGVRTFQTASFVVLGDGFLGKDMGFRNTAGAEKHQAVAARVQADQAVFFNCAFEGYQDTLYAQTHRQFYRDCVISGTIDFIFGDASAVFQNCTIVFRKPLGNQQNIVTAQGRIDKRENTGFVLQKCVIKADDQLVAAKENIKNYLGRPWKEYSRTIIMETEIGDLIHPDGWLPWEGNFALNTLYYGEYNNNGVGANTNARVSWPGRKVINKDEATRYTVEAFLQGTWINGTGVPAKLGLYN 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1661 1143 SUPERFAMILY Pectin lyase-like 831 1136 IPR011050 -
Ssu1g1661 1143 TIGRFAM PME_inhib: pectinesterase inhibitor domain 583 741 IPR006501 GO:0004857
Ssu1g1661 1143 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 185 IPR006501 GO:0004857
Ssu1g1661 1143 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 187 IPR035513 -
Ssu1g1661 1143 Gene3D - 826 1141 IPR012334 -
Ssu1g1661 1143 Gene3D - 225 535 IPR012334 -
Ssu1g1661 1143 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 187 IPR035513 -
Ssu1g1661 1143 PANTHER PECTINESTERASE 30 525 - -
Ssu1g1661 1143 PANTHER PECTINESTERASE 532 1141 - -
Ssu1g1661 1143 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 45-RELATED 30 525 - -
Ssu1g1661 1143 SUPERFAMILY Pectin lyase-like 227 525 IPR011050 -
Ssu1g1661 1143 CDD PMEI-like_3 41 188 - -
Ssu1g1661 1143 ProSitePatterns Pectinesterase signature 2. 373 382 IPR033131 -
Ssu1g1661 1143 Pfam Pectinesterase 230 525 IPR000070 GO:0030599|GO:0042545
Ssu1g1661 1143 Pfam Pectinesterase 832 1127 IPR000070 GO:0030599|GO:0042545
Ssu1g1661 1143 MobiDBLite consensus disorder prediction 185 220 - -
Ssu1g1661 1143 ProSitePatterns Pectinesterase signature 2. 976 985 IPR033131 -
Ssu1g1661 1143 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 590 742 IPR035513 -
Ssu1g1661 1143 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 45-RELATED 532 1141 - -
Ssu1g1661 1143 Pfam Plant invertase/pectin methylesterase inhibitor 591 737 IPR006501 GO:0004857
Ssu1g1661 1143 Pfam Plant invertase/pectin methylesterase inhibitor 38 184 IPR006501 GO:0004857
Ssu1g1661 1143 Gene3D Invertase/pectin methylesterase inhibitor family protein 588 743 IPR035513 -
Ssu1g1661 1143 CDD PMEI-like_3 595 744 - -
Ssu1g1661 1143 SMART PMEI_2 34 184 IPR006501 GO:0004857
Ssu1g1661 1143 SMART PMEI_2 587 738 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1661 Ssu-Chr1 40225311 40303327 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1661 20 525 Carbohydrate Esterase AT2G26440 64.672 0.0 678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1661 - - gmx:100807628 942.184