Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1660 ATGGCTCTTTTCCCGACAAAACAGCTGACTCCAATTCCTGCTGCCACATTCatcttcttcttgttgttgttggtgtCTCCGTGCGCCCCGTTTGTTCGCTCTGATTTCGTGAGCCTGAAAGTTTCTCCTTCTGAATTCATAGGCTCCGTGAGAACAGTGGATGACGTTTTGCAAAACGTTACCTCCACTCTCAAGTCTGAGTTCAGCAATGTCAATAATGACTTTCGTGTTTCTGACGCCATTTCCGCATGTCTCGATTTGTTAGACTTGTCTACTGATGAGCTCAGCTGGTCAATTTCCGCTGTTGAAAGTCCTCAAGGAAAGCATAACAGTACCGGGAATCTGAGCTCTGATTTGAGGACATGGCTGAGCGCTGCACTTGCGAATACAGATACATGCATGGATGGTTTTGAAGGTAGCAGTGGGAACGTGAAGGGTTTAATATCCACTGGAATTGACCAAGCGAATTGGTTGCTCCAAAAGATTCTCACCCAGGTGAAGAATCCTGTTTTGGATTATTTCACTGGAAGTAGAAGTAGTAGGGGCAAATTTCCTTCGTGGGTTGATGCAGGGGACAAGATGCTGCTGCAGAGAAATGGGGTGCAAGCGGATGCTGTAGTTGCTACTGATGGGACAGCGAATTTTACTAAGGTGATGGATGCTGTGCAAGCAGCACCTGAGTATACCATGAAACGGTATGTGATATACATAAAGAAGGGTGTTTACAATGAGAACGTTGAGATTAATAAGAAGAAGTGGAACCTCGTGATGATTGGAGATGGTATGGATGCCACTGTTATCACCGGCAACCTGAGTCGTACTGAAAATTTGACCACATTCAGGACTGCTACCTTTGCTGTCAATGGCAGAGGTTTCATAGCACGTGACATTTCGTTCCGGAACACTGCAGGGCCCGAGAGGAATCAAGCTGTTGCGCTAAGATCAAACTCTGACCTCTCTGTGTTCTACCGATGTGGGGTTTCGGGCTACCAAGACAGCCTCTATGCCCACTCCTTGCGCCAATTCTACCGAGAATGCAAAATAAGTGGCACCGTGGATTTCATATTTGGGCATGCCAGTGCAGTGTTCCAAAACTGCTCACTATTGGTAAAGAAAGGCTTACCAAACCAGAAGAACACAATCACGGCTCAAGGGAAAACGGACCCAACCAAACCATCTGGTTTCTCCATCCAATTCTGCAACATTTCAGCAGATTATGACCTTCTACCCTCGGTTAACACAACCTCAACATACCTTGGTAGACCGTGGAAAGCATATTCTACAACAATTTTCATGCAGTCCTACATAAGCGACGTGTTAAGGCCAGAAGGGTGGCTAGAGTGGAATGGGTCATTGTATTTGGACACCTTGTACTATTCTGAGTATAATAATTATGGACCAGGAGCTAAGCTAGATAACAGAGTGAAATGGCCAGGGTATCATATGATAAATGATTCTAGCCAGGCTTTAAACTTCACTGTGGCCAATCTGATTTTCGGGAATCTATGGTTACCTTCAACCGGTGATTTCGACCTCATCACAGAACGGCGAAGAAACGAGCAGAGAAAAAAGCTGAGGAAGAAGATCCTCATCGGCGTAGTCTCTGCCGTTCTCCTCGCGTGCATAGTTGGTGCTGCAGCGTTTGTCGTGGTGCGAAGGACAGGCCGCGGCTCCGACACCAAGAATGCAACTCCCGTGGAACAAACCACCGCACCACGCGTGGGCCAAAACTCCAGGCTCGTGCAAATGATATGCGGCGCCGCGGAATACAAAAGCAAATGTGAAAGCACCCTTGGTGAAGTCCTAAAGAAGGACCCCAAATTGGAACAACCCAAGGACCTTGTCTTGGTGTCTATGCAACTTGCTGACAATGAGGTTAACAAGGCCCTCAACCAAATCTCCCAAATGAACTTTGCATCGGAACAAGAGAAAGGCGCGTACGAAGATTGCAAGCAACTGTTCAAGGACGCCAAGGAAGAGCTTGGGTTCTCAATCACCGAAGTCGGCGAAAACGATGTGGGCAGCCTCTCGTCGAAGGCTCCCGAACTGAACAACTGGCTCAGTGCAGTGATGTCTTACCAACAAACCTGCATTGATGGGTTTCCCGAAGGGGAGTTGAAGAATAAGTTGATGAGTACCTTCAGTGAGTCGAAGGAACTTGTTAGCAATTCCCTTGCGGTTGTGGCGCAGGTGTCTTCGTTCTTTGCTATATTCAAAGGCGCTGGGAATATTCACCTTCCGTGGTTGAACAATGGTGATGCACCTGCACCTGCACCTGCACCTGCTTCTGGGCTCGGTTCTGATCCTTTTTCTGGTTTTGCTTTTGCTCCTGGTCTTTCTCCTGCTCCTGGTTCCGCTCCTGGCCCGGTTCCTTCTTGGGCTGACCTGGTTCCTACATGGACTGGCTCGGTTCCTACTTGGGCTGGCCCTTCTGAGTTGAAGGGATCAGATGAGAAACTCACACCTAACGTCACGGTGGCACAAGATGGCAGCGGAAAATTCAAAACCGTCTCAGAAGCTTTGGCTGCCATCCCAGAAACATATGTGGGCAGGTATGTGGTTTATGTTAAAGAAGGAGTATACGATGAGACAGTGACAGTGACAAAGAAAATGGTAAACCTAACCATGTTTGGCGATGGAATGCAAAAGAGTATCATCACTGGCAACAAAAATTTTGTGGATGGAGTCAGGACTTTCCAAACTGCATCATTTGTGGTGCTTGGAGATGGATTCCTGGGCAAAGATATGGGATTCAGAAACACTGCTGGTGCAGAGAAGCATCAAGCAGTGGCTGCAAGAGTGCAAGCAGATCAGGCAGTGTTTTTCAACTGTGCCTTTGAGGGCTACCAAGACACTCTATACGCCCAAACTCACAGACAGTTCTACCGCGACTGTGTCATTTCAGGCACCATTGACTTCATCTTTGGTGATGCTTCAGCTGTGTTCCAAAACTGCACCATTGTATTCAGAAAACCACTGGGCAACCAGCAAAACATTGTGACTGCTCAAGGGAGAATCGACAAGCGAGAGAACACTGGCTTTGTTCTGCAGAAGTGTGTGATCAAAGCAGATGATCAATTGGTTGCTGCGAAGGAAAATATCAAGAACTACCTCGGAAGGCCTTGGAAGGAGTACTCAAGAACCATCATCATGGAAACTGAAATCGGGGACTTAATTCACCCTGATGGGTGGCTACCTTGGGAAGGGAACTTTGCACTAAACACACTGTATTATGGTGAGTACAACAACAATGGAGTTGGTGCCAACACCAATGCCAGGGTCAGTTGGCCTGGCCGCAAAGTCATTAATAAGGATGAGGCTACCAGGTACACGGTTGAGGCTTTCTTGCAAGGGACATGGATCAATGGCACAGGTGTACCAGCAAAACTGGGCTTGTACAATTAA 3405 0.472 MALFPTKQLTPIPAATFIFFLLLLVSPCAPFVRSDFVSLKVSPSEFIGSVRTVDDVLQNVTSTLKSEFSNVNNDFRVSDAISACLDLLDLSTDELSWSISAVESPQGKHNSTGNLSSDLRTWLSAALANTDTCMDGFEGSSGNVKGLISTGIDQANWLLQKILTQVKNPVLDYFTGSRSSRGKFPSWVDAGDKMLLQRNGVQADAVVATDGTANFTKVMDAVQAAPEYTMKRYVIYIKKGVYNENVEINKKKWNLVMIGDGMDATVITGNLSRTENLTTFRTATFAVNGRGFIARDISFRNTAGPERNQAVALRSNSDLSVFYRCGVSGYQDSLYAHSLRQFYRECKISGTVDFIFGHASAVFQNCSLLVKKGLPNQKNTITAQGKTDPTKPSGFSIQFCNISADYDLLPSVNTTSTYLGRPWKAYSTTIFMQSYISDVLRPEGWLEWNGSLYLDTLYYSEYNNYGPGAKLDNRVKWPGYHMINDSSQALNFTVANLIFGNLWLPSTGDFDLITERRRNEQRKKLRKKILIGVVSAVLLACIVGAAAFVVVRRTGRGSDTKNATPVEQTTAPRVGQNSRLVQMICGAAEYKSKCESTLGEVLKKDPKLEQPKDLVLVSMQLADNEVNKALNQISQMNFASEQEKGAYEDCKQLFKDAKEELGFSITEVGENDVGSLSSKAPELNNWLSAVMSYQQTCIDGFPEGELKNKLMSTFSESKELVSNSLAVVAQVSSFFAIFKGAGNIHLPWLNNGDAPAPAPAPASGLGSDPFSGFAFAPGLSPAPGSAPGPVPSWADLVPTWTGSVPTWAGPSELKGSDEKLTPNVTVAQDGSGKFKTVSEALAAIPETYVGRYVVYVKEGVYDETVTVTKKMVNLTMFGDGMQKSIITGNKNFVDGVRTFQTASFVVLGDGFLGKDMGFRNTAGAEKHQAVAARVQADQAVFFNCAFEGYQDTLYAQTHRQFYRDCVISGTIDFIFGDASAVFQNCTIVFRKPLGNQQNIVTAQGRIDKRENTGFVLQKCVIKADDQLVAAKENIKNYLGRPWKEYSRTIIMETEIGDLIHPDGWLPWEGNFALNTLYYGEYNNNGVGANTNARVSWPGRKVINKDEATRYTVEAFLQGTWINGTGVPAKLGLYN 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1660 1134 CDD PMEI-like_3 584 733 - -
Ssu1g1660 1134 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 579 731 IPR035513 -
Ssu1g1660 1134 CDD PMEI-like_4 16 167 - -
Ssu1g1660 1134 ProSitePatterns Pectinesterase signature 2. 967 976 IPR033131 -
Ssu1g1660 1134 SUPERFAMILY Pectin lyase-like 201 508 IPR011050 -
Ssu1g1660 1134 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 45-RELATED 51 506 - -
Ssu1g1660 1134 Gene3D - 817 1132 IPR012334 -
Ssu1g1660 1134 Gene3D - 198 510 IPR012334 -
Ssu1g1660 1134 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 167 IPR035513 -
Ssu1g1660 1134 Gene3D Invertase/pectin methylesterase inhibitor family protein 577 732 IPR035513 -
Ssu1g1660 1134 Pfam Plant invertase/pectin methylesterase inhibitor 580 726 IPR006501 GO:0004857
Ssu1g1660 1134 Pfam Plant invertase/pectin methylesterase inhibitor 57 148 IPR006501 GO:0004857
Ssu1g1660 1134 SMART PMEI_2 42 154 IPR006501 GO:0004857
Ssu1g1660 1134 SMART PMEI_2 576 727 IPR006501 GO:0004857
Ssu1g1660 1134 PANTHER PECTINESTERASE 51 506 - -
Ssu1g1660 1134 PANTHER PECTINESTERASE 519 1132 - -
Ssu1g1660 1134 ProSitePatterns Pectinesterase signature 2. 348 357 IPR033131 -
Ssu1g1660 1134 SUPERFAMILY Pectin lyase-like 822 1127 IPR011050 -
Ssu1g1660 1134 ProSitePatterns Pectinesterase signature 1. 229 248 IPR018040 -
Ssu1g1660 1134 Pfam Pectinesterase 204 500 IPR000070 GO:0030599|GO:0042545
Ssu1g1660 1134 Pfam Pectinesterase 823 1118 IPR000070 GO:0030599|GO:0042545
Ssu1g1660 1134 TIGRFAM PME_inhib: pectinesterase inhibitor domain 572 730 IPR006501 GO:0004857
Ssu1g1660 1134 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 45-RELATED 519 1132 - -
Ssu1g1660 1134 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 152 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1660 Ssu-Chr1 40012097 40104462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1660 18 508 Carbohydrate Esterase AT3G43270 58.939 0.0 616
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1660 - - gmx:100807628 951.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0537 6 8282080 8284670 Ssu1g1660 1 40012097 40104462 PCT