Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1659 ATGTCTGATGCAGTCGAAGGTGAGCATGCTCACAGCAGTGAATGCAGTCTCACAAGATATCCCAATCTATGTGCTGAAACCTTGATGGGATTGGGTTCGGGAAATCAAAATGTTGATAAAATTGTGGCTCTTGTTAACAAAACCATATTTGAAACCAATTTGCCAAATTCATATTTCACTCAATTCAAGACTGGGGCTGCTCGACTAGCCCATTCTGTTGTTGCAGACTACTGTGAAGAGCTAATGAGCATGTCACTGAAAAGGCTGGACCAATCCCTGAAAGCACTGAAATCCCCtagaagaaacaacaatgacatCCAAACATGGCTAAGTGCTTCTCTAACTTTCCAACAATCTTGTAAAGACTATGTACATGCACACACCTCAATACTCTCTGCAGATGACCTTATGCAAAGGATGTCTAACAAGATGGACTATCTTTCTCAATTGGGAAGCAATTCATTAGCTCTTTTTAACATGATGAGCACAACAACTAGCAACAAAATTGGTGCCAATGAAAAGGAACAGGAATTTACTAAGTGGGTATCAACCAAAGGACGTAAACTGCTTCAAGGAGCCACCATAAAAGCAAATGCAATAGTTGCACAAGATGGTTCAGGAAACTACAAAACAGTTTCTGAAGCCATTGAGGCAGCTTCGGGGACACGGTTTGTGATTTATGTTAAGGAAGGGGTTTATAAGGAGAAGATTCGCACCAACAAGGATGGTATCACCTTGATAGGAGATGGAAAATACTCTACTCTTATTGTTGGGAATGACAGCGTTGCCAAGGGTGCTACCTTACCTGACTCGGCCACATTTACAATCACAGGCGATGGCTTTATTGCGCGAGATATCGGTTTCCAAAACATCGCAGGCCCTCAAGGCCAACAAGCCGTGGCACTAAACATCGCTTCAGACCGTTCCGTCCTCTACAGATGCAGCATATCAGGGTACCAGGACACCCTCTACGCGCACGCCCTTCGCCAGTTCTACAGAGAATGCGACATCTACAGCACCGTTGACTTCATCTTCGGCAACGCAGCCGCGGTTTTCCAGCGCTGCAACCTGGCGCTCCGCCGCCCCCACGGCGGCGGCTACAACGCCGTTCTCGCTAACGGAAGAACGGACCCGGGACAGAGTACGGGCTTTTCCGTTCACAAGTGTAGCATAGCGCCGAGTTCGGAATTTTCCGCTGTGAAACACTCGTACAGTTCGTTTCTGGGGAGGCCCTGGAAGGAGTATTCTAGGTCTGTGGTGATGGAAAGTACCATAGATGGTGCTATTGCGGCGAGGGGGTGGATTGAGTGGCCTGGGTATGGAAGCTCTGTGTTGAGGACTCTGTATTTTGCAGAGTATGGTAATGAAGGACCTGGTGCTGGGACTGGCAAGAGGGTGCAGTGGCCTGGTTTTCGTGTTGTTGGGGATCAAGAGGCTGTGAAGTTTACTGTTGCTAGTTTTATTGCTGGAAATTCGTGGATTCCCTCCACTGGAGCTACGTTCATTTCAGGGCTTAATTGA 1521 0.4681 MSDAVEGEHAHSSECSLTRYPNLCAETLMGLGSGNQNVDKIVALVNKTIFETNLPNSYFTQFKTGAARLAHSVVADYCEELMSMSLKRLDQSLKALKSPRRNNNDIQTWLSASLTFQQSCKDYVHAHTSILSADDLMQRMSNKMDYLSQLGSNSLALFNMMSTTTSNKIGANEKEQEFTKWVSTKGRKLLQGATIKANAIVAQDGSGNYKTVSEAIEAASGTRFVIYVKEGVYKEKIRTNKDGITLIGDGKYSTLIVGNDSVAKGATLPDSATFTITGDGFIARDIGFQNIAGPQGQQAVALNIASDRSVLYRCSISGYQDTLYAHALRQFYRECDIYSTVDFIFGNAAAVFQRCNLALRRPHGGGYNAVLANGRTDPGQSTGFSVHKCSIAPSSEFSAVKHSYSSFLGRPWKEYSRSVVMESTIDGAIAARGWIEWPGYGSSVLRTLYFAEYGNEGPGAGTGKRVQWPGFRVVGDQEAVKFTVASFIAGNSWIPSTGATFISGLN 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1659 506 Pfam Plant invertase/pectin methylesterase inhibitor 13 157 IPR006501 GO:0004857
Ssu1g1659 506 Gene3D Invertase/pectin methylesterase inhibitor family protein 12 163 IPR035513 -
Ssu1g1659 506 TIGRFAM PME_inhib: pectinesterase inhibitor domain 13 161 IPR006501 GO:0004857
Ssu1g1659 506 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 13 162 IPR035513 -
Ssu1g1659 506 PANTHER PECTINESTERASE 7 504 - -
Ssu1g1659 506 Gene3D - 192 505 IPR012334 -
Ssu1g1659 506 SMART PMEI_2 6 157 IPR006501 GO:0004857
Ssu1g1659 506 Pfam Pectinesterase 198 491 IPR000070 GO:0030599|GO:0042545
Ssu1g1659 506 SUPERFAMILY Pectin lyase-like 193 504 IPR011050 -
Ssu1g1659 506 CDD PMEI-like_3 15 163 - -
Ssu1g1659 506 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 54-RELATED 7 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1659 Ssu-Chr1 39956162 39961033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1659 4 506 Carbohydrate Esterase AT3G49220 42.045 3.34e-129 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1659 K01051 - gmx:100795439 845.499