Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1655 ATGGCTTCTTCTGATTCCGTTCCTTCTCTCAACGTTGTCGGATACGCACACACCACTTCTCCGCCGAGCCACCTATCATCGCTATCACGCGTCACTCTCGTAACCGTAACGGTCCTCGCCGTCGCTGTTACCGTTTCCATCGCTTTCTATTTCCTTCTCCGTTACCGTAATAACCGTTTTCTCCGCCGTTCATCCCCGTCATCCGCTGCAGTATTCTCCTCCGGCAATAGAATATCGCCTGAGAGCGCTTCGTCTTCCGTCGCCGACTCTCTCCCGGCGTTCACCTTCTCCTCCGTCACGCGCAGCGCCGCTGCCGGGGGCGGCGGCGGCGACTGCGCCGTTTGCCTATCGAGGTTTGAGCAGCACGACCTTCTCCGGTTGCTACCTCTCTGCTGCCACGCGTTCCACGCCGAATGCATCGACACGTGGCTCCGATCGAATCTCACGTGTCCGCTCTGCCGATCCGCCGTCGGCGCGTCGGAATCGGAACTCGCGAAGGTTTTCCGGTCGTCGTCGGTCGGCGCCGGCGACAGCTTCCGGCTGGAGATAGGAAATATCAGCAGCGGCCGCGGCGGAGTGGCGACATCAGCCGCCGTTGCCGGAGAAATGCGTGGAAGGTCGTTTTCCGTTGGCGCGTTCGAGTATTTCATCGACGAGGTGGCTGAGGTTGAGGTTGCGTTCAGTTACGCTCACCGGATCAGTGTTTCCGGCGAGAAAGACGACCGTGCTCCGGTGGAGGCTCCGGCGGATTCTCTGCCGAGTTTGGCTGGTGAGGTAGGGCGTGGTGGAAGTAGTAGTAATAGTAACGGCTGGTTGAAGGATTACGTTGATCGTCTTTCGAATACGATGTCGTTTCGCAGTTCTGGAAGGTTCTTCACTGGGAGTAGTCGCGGAACCGACGTCGTTGCGAGTGGAGAATACGACGTGGAAGCGAACCGTTTTGGGGATGAAATAGGCGAAATGTTCCGGTGGCTGTCGGGGGTTTGA 987 0.5846 MASSDSVPSLNVVGYAHTTSPPSHLSSLSRVTLVTVTVLAVAVTVSIAFYFLLRYRNNRFLRRSSPSSAAVFSSGNRISPESASSSVADSLPAFTFSSVTRSAAAGGGGGDCAVCLSRFEQHDLLRLLPLCCHAFHAECIDTWLRSNLTCPLCRSAVGASESELAKVFRSSSVGAGDSFRLEIGNISSGRGGVATSAAVAGEMRGRSFSVGAFEYFIDEVAEVEVAFSYAHRISVSGEKDDRAPVEAPADSLPSLAGEVGRGGSSSNSNGWLKDYVDRLSNTMSFRSSGRFFTGSSRGTDVVASGEYDVEANRFGDEIGEMFRWLSGV 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1655 328 SUPERFAMILY RING/U-box 105 159 - -
Ssu1g1655 328 SMART ring_2 112 153 IPR001841 -
Ssu1g1655 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 159 IPR013083 -
Ssu1g1655 328 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 316 - -
Ssu1g1655 328 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Ssu1g1655 328 Pfam Ring finger domain 111 154 IPR001841 -
Ssu1g1655 328 MobiDBLite consensus disorder prediction 240 267 - -
Ssu1g1655 328 CDD RING-H2_PA-TM-RING 111 154 - -
Ssu1g1655 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1655 Ssu-Chr1 39714310 39715296 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1655 10 154 C3H Transcription Factor Family AT2G34990 33.333 9.64e-21 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1655 K10663 - gmx:100804962 386.726