Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1654 ATGATGTTCCATTCTCAGGGTGTGTCAAGGCATTGTAGTCTCCTTGCTGTCCTGAGTGGTAAATCACGTGACATTAAACAAAAGCAGAAGCAGGGTGCTGCTTCTGAGGATCAACCTCCTTACCCTTTTCCAGAGGTTTCTTCCTCTGGCCATCTTGAGGTCAAGGTATTGATCAAACCTACTGCCAATGAACTTGGTCGAGCTCTTGAACAACTGCAGCCGGATTATGTTTACCTGCAAGGCCAGCTGCTAGAAGATAGGGGAGAAATTGGGCCTCTTGTATGGGAAGATTTTGACCTGTCTGTCCCAGAAACCTTGTGTGGATTGTTTTCTTCCAAATTACCTAATACTGTTTATCTGGAAAATCCCAAGGGAGAAAAATTGGCAGAGGCACTCCGTAATAAGGGAGTTCCACACACTATCTATtggaaaaatgatttttcaaagtatgcGGCTTCACATTTTCGtcattcttttttctctgtGGCACAGAGTACATCCAGCCATACATGGGATGCTTTCCAGCTTGCTCTGGCATCTTTTAGACTATACTGTATACAAAACAATGTCTTACCTTCTAACAGCCAGAAGGGTGCTGGTAAGCTTGGGCCACAAATTCTTGGGGTTCCTCCCAACATTGATGTTAGTCCATGTGTAGAAGAGATGAAGGAAGAGGAAGCTTCACCTGAGACTATTTCTGCTGTAAAGATATATGATGATGATGTGAACATGAGATTTCTTGTCTGTGGAGTTCCCTGCACATTGGATGCTTGTTTGTTGGGGTCATTAGAGGATGGACTCAATGCTCTTCTATTTACAGAAATACGTGGATGCAAACTTCACAACAGGACAAGTGCTCCACCACCACCTCTCCAGGCAGGAACATTCTCACGGGGTGTAGTGACTATGCGTTGTGATATATCCACATGTAGTTCTGCTCATATATCACTTTTGGTGTCTGGTAGTGCAGACACTTGTTTCAATGATCAGCTTTTGgagaatcatattaaaaaagagCTCATTGAGAAGAGTCAACTTGTCAAGGCATTTCCTAATCATGAACAAAGTAAATCACCTTCCTCTGAGCCTCGAAGATCAGCCTCAGTAGCCTGTGGATCTAATGTGTTTGAAGTTTGTATGCGAGTTCCTGCATGGGCTTCACAGGTTCTGAGACAGCTTGCACCCAATGTGTCATACCGCAGCCTTGTTATGTTGGGAATTGCTAGTATTCAAGGATTGCCAGTTGCATCTTTTAATAAAGATGATGCTGAACGTCTCCTTTTCTTTTGTACTAGGCAGGAGAAAGAAAACTGTCCTAACGATCCTGTTTTCTCAATTCCTAGTTGGCTGATACCTCCACCACCCAATCGAAAAAGATCTGAACCAAGTTCTAGCACAAAGTCTATTAATGCTAGTGGCCAGAGAATTGAAGATATTGGCAGTCATAGACAGAAATTAAATCTTGCTGCTATGAGGCCAATCCCTCACTCTCGTAGACACAAGATTCTCCCCTTTTCTGGATTGTCCGAGGGTGCAAGATATAATGGAGACCATGGAAAATCAAATCAGCCACTTGCTCCTATTAAGCATAATGTTTCAGGCCCTACTTCAGTTACAAATAGGAAATCTTTGTCAAACTCATTTCAAGCTCACCAGATTATTTCTTTGAATCCACTACCTATGAAAAAGCATGGTTGTGACAGAGCTCCAATACGAGTTTGCTCAGAGGAGGAATTCCTGAGGGATGTAATGCAGTTTTTGATCCTTCGGGGGCACAATCGTCTAATTCCGCCTGGTGGGCTTGCTGAGTTCCCTGATGCCGTTTTGAATGCAAAACGCCTTGACCTGTTCAACTTGTATAGGGAGGTGGTTTCAAGAGGAGGTTTTCATGTTGGAAATGGGATCAATTGGAAAGGGCAAGTTTTCTCAAAGATGCGCAATCACACCATGACAAATAGAATGACTGGTGTTGGCAATACACTCAAAAGACATTACGAAACTTATCTCTTAGAATATGAATTAGCTCATGATGACGTAGATGGAGAGTGCTGCTTGATGTGTCACAGTAGCGCAGCAGGTGACTGGGTGAACTGCGGTGTATGTGGTGAATGGGCTCATTTTGGGTGTGATAGGCGGCAGGGACTTGGAGCATTTAAGGACTATGCTAAAACCGATGGGCTGGAGTACGTTTGTCCTCGCTGCAGCGCATTAAAATTCAgtaaaaaatcccaaaaaacTGCAAATGGTTATTAA 2253 0.4217 MMFHSQGVSRHCSLLAVLSGKSRDIKQKQKQGAASEDQPPYPFPEVSSSGHLEVKVLIKPTANELGRALEQLQPDYVYLQGQLLEDRGEIGPLVWEDFDLSVPETLCGLFSSKLPNTVYLENPKGEKLAEALRNKGVPHTIYWKNDFSKYAASHFRHSFFSVAQSTSSHTWDAFQLALASFRLYCIQNNVLPSNSQKGAGKLGPQILGVPPNIDVSPCVEEMKEEEASPETISAVKIYDDDVNMRFLVCGVPCTLDACLLGSLEDGLNALLFTEIRGCKLHNRTSAPPPPLQAGTFSRGVVTMRCDISTCSSAHISLLVSGSADTCFNDQLLENHIKKELIEKSQLVKAFPNHEQSKSPSSEPRRSASVACGSNVFEVCMRVPAWASQVLRQLAPNVSYRSLVMLGIASIQGLPVASFNKDDAERLLFFCTRQEKENCPNDPVFSIPSWLIPPPPNRKRSEPSSSTKSINASGQRIEDIGSHRQKLNLAAMRPIPHSRRHKILPFSGLSEGARYNGDHGKSNQPLAPIKHNVSGPTSVTNRKSLSNSFQAHQIISLNPLPMKKHGCDRAPIRVCSEEEFLRDVMQFLILRGHNRLIPPGGLAEFPDAVLNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLMCHSSAAGDWVNCGVCGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPRCSALKFSKKSQKTANGY 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1654 750 SUPERFAMILY ARID-like 574 688 IPR036431 GO:0003677
Ssu1g1654 750 MobiDBLite consensus disorder prediction 460 477 - -
Ssu1g1654 750 CDD PHD_ARID4_like 683 734 - -
Ssu1g1654 750 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 677 740 IPR013083 -
Ssu1g1654 750 Gene3D - 571 676 IPR036431 GO:0003677
Ssu1g1654 750 SUPERFAMILY FYVE/PHD zinc finger 676 739 IPR011011 -
Ssu1g1654 750 MobiDBLite consensus disorder prediction 449 477 - -
Ssu1g1654 750 ProSiteProfiles ARID domain profile. 573 677 IPR001606 GO:0003677
Ssu1g1654 750 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 750 IPR042293 -
Ssu1g1654 750 MobiDBLite consensus disorder prediction 26 47 - -
Ssu1g1654 750 CDD ARID 575 673 - -
Ssu1g1654 750 Pfam ARID/BRIGHT DNA binding domain 576 673 IPR001606 GO:0003677
Ssu1g1654 750 SMART ARID_2 570 673 - -
Ssu1g1654 750 PANTHER ARID/BRIGHT DNA-BINDING DOMAIN PROTEIN 4 750 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1654 Ssu-Chr1 39674857 39681738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1654 2 749 ARID Transcription Factor Family AT3G43240 66.489 0.0 999
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Ssu1g1654 ARID 3.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1654 - - gmx:100808357 1428.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1654 1 39674857 39681738 Ssu1g1654 1 39674857 39681738 ECH