Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1653 ATGCTGAATCCCGAACCGCCGCCGCCGCCGGTGATGAATCCGCCGGCAACACCCCTGAACCGCGAAACGACGTCGCTCAGGAAGAAGCACAGAAGGGGAGTTTCGGTTCCCCCGTCGGCGGAAGTGGTGGACGTGGAATCCTCCTTCTTCGCGCCGATCTCCCTCAGAGGCACCACCAGGTCAAACGCCATCTCCGTGGAGCAATACGACGGCGTTTCCAACCACGGCCACGTCATCAACCTCTCCGATACCGAGGAAGACGACGACGTTCGGATCCTCAAGTTCACGCCCCAAAGCACCACTTTCGGAAAACGCAAGAAAACCAAGGGAGAGTCTTCCAACAGCGCCCCGTTCCTCTGCGAAATCTGCACGGAGACCAAAACCGCCAGCGACTCCTTCGGCATCATCGGGTGCTGCCACGTGTACTGCAAAGACTGCGTCGCGCAGTACGTGGAGTCGAGGCTTCAAGAAAACGTGGTCAACATCGGGTGCCCCGTGCCGCGATGCAGGGGATTACTGGAAGCGGAGGATTGCCGCGCGATTCTGGCGCCGCCAGTTTTCGATCGGTGGGGGAAGGCGCTGTGCGAGGCCGTGATCGCTGCGGAGGAGAAGTTCTATTGCCCCTTCGCGGAGTGCTCTGCGCTGTTGATTCGCGAGGTGGGAGATGATATTAGGCAATCGGAGTGCCCCAACTGTAGGAGGCTGTTCTGTGCCCTCTGTAGGGTACCCTGGCACCAGGACATGTCGTGCGACGAGTTTCAGAAGCTGAACGAGGACGAGAGAGGGAGGGATGATGTGATGCTGATGAACCTTGCTAATCAGATGAAGTGGAAGAGGTGCCCCAAGTGTAGGTTTTACGTCGCCAAATCTGAGGGCTGCATGTACATGAAATGCAGGTGTGGAAACGCTTTCTGTTACAACTGCGGAACGCCTTCAATAAGTTCCTCCCATTATTGCCACCGCTGTAGACACTAG 975 0.5754 MLNPEPPPPPVMNPPATPLNRETTSLRKKHRRGVSVPPSAEVVDVESSFFAPISLRGTTRSNAISVEQYDGVSNHGHVINLSDTEEDDDVRILKFTPQSTTFGKRKKTKGESSNSAPFLCEICTETKTASDSFGIIGCCHVYCKDCVAQYVESRLQENVVNIGCPVPRCRGLLEAEDCRAILAPPVFDRWGKALCEAVIAAEEKFYCPFAECSALLIREVGDDIRQSECPNCRRLFCALCRVPWHQDMSCDEFQKLNEDERGRDDVMLMNLANQMKWKRCPKCRFYVAKSEGCMYMKCRCGNAFCYNCGTPSISSSHYCHRCRH 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1653 324 SUPERFAMILY RING/U-box 261 322 - -
Ssu1g1653 324 MobiDBLite consensus disorder prediction 1 35 - -
Ssu1g1653 324 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 57 323 - -
Ssu1g1653 324 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 57 323 IPR031127 GO:0004842|GO:0016567
Ssu1g1653 324 MobiDBLite consensus disorder prediction 1 16 - -
Ssu1g1653 324 Pfam IBR domain, a half RING-finger domain 196 250 IPR002867 -
Ssu1g1653 324 ProSiteProfiles TRIAD supradomain profile. 116 324 IPR044066 -
Ssu1g1653 324 SUPERFAMILY RING/U-box 115 198 - -
Ssu1g1653 324 SUPERFAMILY RING/U-box 194 255 - -
Ssu1g1653 324 SMART ibrneu5 260 322 IPR002867 -
Ssu1g1653 324 SMART ibrneu5 188 250 IPR002867 -
Ssu1g1653 324 Gene3D - 247 324 - -
Ssu1g1653 324 ProSitePatterns Zinc finger RING-type signature. 138 147 IPR017907 -
Ssu1g1653 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 202 IPR013083 -
Ssu1g1653 324 ProSiteProfiles Zinc finger RING-type profile. 120 168 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1653 Ssu-Chr1 39661079 39663305 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1653 81 311 C3H Transcription Factor Family AT2G19610 30.705 6.35e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1653 K11975 - gmx:100807821 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1653 1 39661079 39663305 Ssu1g1653 1 39661079 39663305 ECH