Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1652 atgggcAACAACCTTTGTGTCATTGTGAAGACTAAAAGAAAGGCCAACACAAAGCCTACCCCATCTACCTTGAACCTAGAAACCATCTTGGAAAGCTACGTCCCCCCACACCACCTAAACCGCGCCCCGGTTTACACCTGCGAAATTTGCTGCGAATCAAGGCCCGTATATGACTCCTTCACCCCCGACGGCTGTGGCCACTTTTACTGCACCAAGTGCACCCTCAAATACATAGTGTCCAAGCTCCAAAACAACGTGTTGAACCTTAAGTGCCCCGAGTTAGGGTGCCGCGGCACGTTGAGTCCTCATTTTTGCAAGCCGATTTTGCCAAGCTACGTGTTGGTGTGGTGGGAAAAGGCACTGTGCGAGTCGGGGATTCCCGAGGAGGACAAGTTTTATTGTCCTTTCAAGGATTGTTCGGCACTGTTGTTGAATGAACCTCGCAAGGGAGTGGCCATTAGAGCCTCCAATTGCCCTCATTGCAAGAGGAACATTTGCGTTCAGTGTAGGGCTCCTTGGCATGCGGAAATTAGTTGCGACAAGTTTCAGAAGTTGAAGGACAAGAACGACGATCTGATGCTGGATCTCGCCAAGAGAAGGAAGTGGAGACGGTGCCCTAACTGCAAGCATTACGTTGAAAAGAAACAAGGATGTGATGACATGACATGCAGGTGTTCTCACAGATTTTGTTACAATTGTGGAGATAGCATATACAGTCATGTTGGCCATGATTGTTTTGATGATTAA 747 0.4779 MGNNLCVIVKTKRKANTKPTPSTLNLETILESYVPPHHLNRAPVYTCEICCESRPVYDSFTPDGCGHFYCTKCTLKYIVSKLQNNVLNLKCPELGCRGTLSPHFCKPILPSYVLVWWEKALCESGIPEEDKFYCPFKDCSALLLNEPRKGVAIRASNCPHCKRNICVQCRAPWHAEISCDKFQKLKDKNDDLMLDLAKRRKWRRCPNCKHYVEKKQGCDDMTCRCSHRFCYNCGDSIYSHVGHDCFDD 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1652 248 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 39 239 - -
Ssu1g1652 248 SUPERFAMILY RING/U-box 129 185 - -
Ssu1g1652 248 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 39 239 IPR031127 GO:0004842|GO:0016567
Ssu1g1652 248 SMART ibrneu5 187 245 IPR002867 -
Ssu1g1652 248 SMART ibrneu5 115 179 IPR002867 -
Ssu1g1652 248 Gene3D - 177 247 - -
Ssu1g1652 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 130 IPR013083 -
Ssu1g1652 248 ProSiteProfiles TRIAD supradomain profile. 43 248 IPR044066 -
Ssu1g1652 248 SUPERFAMILY RING/U-box 188 245 - -
Ssu1g1652 248 ProSiteProfiles Zinc finger RING-type profile. 47 92 IPR001841 -
Ssu1g1652 248 Pfam IBR domain, a half RING-finger domain 129 179 IPR002867 -
Ssu1g1652 248 Pfam IBR domain, a half RING-finger domain 196 245 IPR002867 -
Ssu1g1652 248 SUPERFAMILY RING/U-box 43 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1652 Ssu-Chr1 39613660 39616652 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1652 46 234 C3H Transcription Factor Family AT2G19610 30.693 7.52e-23 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1652 K11975 - rcu:8259039 246.899