Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1638 ATGTCCAAAGGAGGAAAACTAATGAAGCTAAAGTCACTGAAGTCGGTGCTCAAGAAATGGAACTCGTTCAGCAGCAAACAGAGCCCCTCCGTCGCCAACGAGGGGGTGTCCGACAGCGATGGCGAATCCTCGTCGCTCCGCCCCGTGTACGTCGGCAAGACGCGGCGGCGCTACCTCGTGAGCGCCGACGTTGTCGGACACCCCCTCTTCCGGGAGCTGGTGGACAGGTCCCGCGACAGCGCCGAGGAGGACGACGACACCATCAACGTGGCGTGCGAGGTTGTCCTCTTCGAACACTTGCTCTGGATGCTCCACAATGCCGATCCCCAACCCGAGTCGCTCCACGAACTCGCCGATTTTTACGCGTGCTAA 372 0.6022 MSKGGKLMKLKSLKSVLKKWNSFSSKQSPSVANEGVSDSDGESSSLRPVYVGKTRRRYLVSADVVGHPLFRELVDRSRDSAEEDDDTINVACEVVLFEHLLWMLHNADPQPESLHELADFYAC 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1638 123 Pfam Auxin responsive protein 13 104 IPR003676 GO:0009733
Ssu1g1638 123 MobiDBLite consensus disorder prediction 21 44 - -
Ssu1g1638 123 PANTHER SMALL AUXIN-UP RNA-RELATED 7 123 - -
Ssu1g1638 123 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 7 123 IPR003676 GO:0009733
Ssu1g1638 123 MobiDBLite consensus disorder prediction 21 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1638 Ssu-Chr1 39429061 39429432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1638 1 104 Calmodulin-binding Proteins AT4G34750 31.193 2.37e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1638 - - gmx:100806227 172.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1638 1 39429061 39429432 Ssu1g1638 1 39429061 39429432 ECH