Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1637 ATGGATAGAGGTGGAGGCTCCAGATTGACTGGAATTAGGCAGATTGTGAGGCTGAAGGAAATGCTCCAGAAGTGGCAAAGTGTGACTTTAGGGCCAAAAGCTTCCAATCCCAGTTCTGATCATGCGACCACTAAAGATGGGAGCATATCGCCATTAATTAACAAAAGGGTAGTAAATGTTATGAATTGTGAATCGGACGAGGAGTTTTGCCAGAGTCCTGAACCGCGTCCGCCACCTGATGTTCCAAAGGGCTACTTGGCAGTGTATGTTGGACCTGAGCTTAGGAGGTTCATCATTCCCACCAGCTACCTTACCCACTCTCTCTTCAAAGTCTTGCTGGAAAAGGCTGCAGAGGAATTTGGGTTTGATCGTAGTGGCGGCCTCACCATCCCTTGTGAGATTGAGACCTTTAAGTACCTACTCAAGTGCATGGAGAATGAGCAGAAAGCGCACCTCGGCCAAAGCGCCCatttagaaaggaaagaagagagaaagagagatgtGAGTAAGAAAAGTGAgattaatttcatttgtttggGAGAGGAAAGACAGGAAGAGATTTGTGGTGAAACTGCAGCTGGAAGCTCGGGAACTGTGAAAGATAACACGATGTTGCATACTGCTGAAATTAGAGTACGAATTAGGGTATTGAGACTAATCCTCTCAGTAAGTGGTAGCATTGATCGTGACAACAACAATCGTGAAAATAGTATGGTGATGGTGTTGGTGATTGTAATTGTGGTAATAGCCATGGCagaggtggtggtggttatAGTAGAGGCAACAACAATGACGCACAAACAATGGTGGCAACAACGATAG 822 0.4221 MDRGGGSRLTGIRQIVRLKEMLQKWQSVTLGPKASNPSSDHATTKDGSISPLINKRVVNVMNCESDEEFCQSPEPRPPPDVPKGYLAVYVGPELRRFIIPTSYLTHSLFKVLLEKAAEEFGFDRSGGLTIPCEIETFKYLLKCMENEQKAHLGQSAHLERKEERKRDVSKKSEINFICLGEERQEEICGETAAGSSGTVKDNTMLHTAEIRVRIRVLRLILSVSGSIDRDNNNRENSMVMVLVIVIVVIAMAEVVVVIVEATTMTHKQWWQQR 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1637 273 Pfam Auxin responsive protein 75 143 IPR003676 GO:0009733
Ssu1g1637 273 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 7 154 IPR003676 GO:0009733
Ssu1g1637 273 MobiDBLite consensus disorder prediction 29 48 - -
Ssu1g1637 273 PANTHER BNAA02G05090D PROTEIN 7 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1637 Ssu-Chr1 39400781 39405154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1637 1 149 Calmodulin-binding Proteins AT5G20810 71.812 1.56e-72 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1637 K14488 - gmx:100527570 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1637 1 39400781 39405154 Ssu1g1637 1 39400781 39405154 ECH
Ssu6g0552 6 8618091 8618567 Ssu1g1637 1 39400781 39405154 PCT