Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1634 atgcaACTACAACTCACACTCGCCACGCTCTTCCTCTCCCTTTTGTTAACATCCCCAACCGTTTTCGCCTCCGCAGCACAAAGCAAGCCGCAGGATCTGGTCCGGTCCTCGTGCGTGCACGCGCAGTACCCGCGGCTGTGTCTCCGCACGCTCTCCAACTACGCCGGGCCCGCCAACACGCCGCTGGACCTGGCCCGGGCCGCGCTGAGGGTGAGCCTGGCCCACACCCGCCGGGCCTCCAAGCGGCGCCGCCGCCATGAGCAGACGGCAGCGCTCCGCGCTGCGCGACTGCACGAGCAGATTTCGGACTCGGTGGAGCAGCTGCGGAGGAGCCTCGACGAGCTGCAGCACCTGCGCGCGGAGACGTTCCGGTGGCAAATGAGCAACGCCCAGACGTGGGTCAGCGCCGCCCTCACCGACGGCGACACCTGCCTCGACGGCTTCGACGAGGACGCCAGGCCCGACGTCAAACGCAGGGTCACGGATTCCGCCAGAGTCACCAGCAATGCTTTGTATATGATTAATCGCCTCGGTCAGAGTGGGACCGGGAAGCCCAGGCCCAGGCCCAAGCCCAAGTCCAAGCCTGAGCCTCGGTCTGGTTCAGGTAGCGAGAACTGA 618 0.657 MQLQLTLATLFLSLLLTSPTVFASAAQSKPQDLVRSSCVHAQYPRLCLRTLSNYAGPANTPLDLARAALRVSLAHTRRASKRRRRHEQTAALRAARLHEQISDSVEQLRRSLDELQHLRAETFRWQMSNAQTWVSAALTDGDTCLDGFDEDARPDVKRRVTDSARVTSNALYMINRLGQSGTGKPRPRPKPKSKPEPRSGSGSEN 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1634 205 CDD PMEI-like_3 36 177 - -
Ssu1g1634 205 SMART PMEI_2 29 173 IPR006501 GO:0004857
Ssu1g1634 205 PANTHER PECTINESTERASE INHIBITOR 3 7 180 - -
Ssu1g1634 205 MobiDBLite consensus disorder prediction 174 205 - -
Ssu1g1634 205 Pfam Plant invertase/pectin methylesterase inhibitor 32 172 IPR006501 GO:0004857
Ssu1g1634 205 PANTHER PECTINESTERASE INHIBITOR-LIKE 7 180 - -
Ssu1g1634 205 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 177 IPR035513 -
Ssu1g1634 205 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 178 IPR035513 -
Ssu1g1634 205 TIGRFAM PME_inhib: pectinesterase inhibitor domain 3 177 IPR006501 GO:0004857
Ssu1g1634 205 Coils Coil 98 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1634 Ssu-Chr1 39039289 39039929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1634 23 174 Carbohydrate Esterase AT2G26450 26.061 1.59e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1634 - - gmx:100816686 256.914