Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1630 atgaagaagcatAGCGAAGCAGTGAAAAATAAGGAGGGTAATGGCACCGACAGTAATGTTTTTGCTTCATGCTCCTTCTCCAGCCTTGGCCTGGATTCCAATTTATGTGACCAACTTCGTGAAAGGTTGGGGTTTGAAGTTCCAACGCTGGTGCAAGCTCAAGCTATTCCTGTTATTCTCTCGGGGCGTCATGcACTGGTAAATGCTGCCACGGGCACGGGGAAGACTGTTGCGTATCTGGCTCCAATCGTTCATCACTTGCAGAGTTATGATAATCGGATTCAGCGCTCTGATGGAACATTTGCGTTGGTTCTTGTACCGACGCGTGAGCTATGTTTGCAGGTTTATGAAATTCTTCAGAAATTATTGCATCGATTTCATTGGATTGTTCCAGGATACATTATGGGTGGTGAAAATAGATCAAAGGAGAAAGCTAGGCTGCGCAAAGGCATATCAATTCTTATAGCAACTCCTGGGCGCCTTTTAGATCACTTGAAGAACACAACATCATTCTTGTACTCAAATCTGCACTGGATAATTTTTGATGAAGCTGATCGGATTTTGGAATTAGGATTTGGAAAAGATATAGAGGAAATACTAGATCTTTTAGGTTCTAGGAAAACAGGGCATGATGACCAAGAGATTATGGTTCCAAGACACTCTAAAATTCAAAGACAGAATTTGCTTTTATCTGCCACCTTAAATGAGAAAGTGAACCACCTTGCTAAAATTAGTCTAGACAATCCAGTGATGATTGGTCTTGATGGTAAGAAAATAGAACCAGTTTCAACAATTGAAAGCCTTGATCCTTCAGAGTCTGATGAAGACAGTGAAGACAAGTATTCCAGTAAAATACCAACAGTTGGAGATTACAAAGTCCCCATACAGTTGATTCAGAGATACATGAAAGTGCCTTGCGGTTCACGGCTTCCTATTCTTCTTTCGATTCTAAAGCATCTCTTTGAAAGGGAACCTTTGCAAAAGGTTGTTGTATTCTTTTCAACATGTGATGCAGTAGACTTTCACTATTCACTGTTAagtgaatttcaattttcatcctATCCACAAACGGTAGAAGGTATCCAACAGATGTTTCTTGGATGCAAAACTTTCCGGTTACATGGTAATATGGAACAGGAGGACCGGAGAACCAGTTTTCAGTCCTTTAAAACTGAGAAATCTGCTTTGCTTTTGTCCACTGATGTTTCTGCTCGAGGCTTGGATTTTCCGAAGGTTAGATGCATCATACAATATGATTCTCCTGGGGAAGCTACGGAATATGTTCATAGAGTTGGTAGAACTGCTCGACTGGGTGAAAGAGGAGAGTCATTGTTATTTCTGCAACCAGTTGAAATAGACTACTTACAGGACTTGGAGAAACATGGTGTCTTACTGACGGAGTATCCTGTCCTCAAAATGTTGGATAGTTTTCCACTATATGGACAAAAGAACCACACAAAGAAGTCTGTTTTCTTAGAGTCACATCCCTGGGTCCTCTGTCTCCAGAAGGCACTTGAAGCCTTCATCATGTCCAAGCCCAAGATGGATGAGCTTGCCAGGAAGGCATTTTGCTGTTGGGTTCGTGCATACACAGCCCATCGAGGTGAGCtgaaaagaatatttatgatcAAGAAACTTCACTTGGGGCACGTAGCAAAAAGCTTTGCATTGAAACAACAACCCTCCTTAGTTGGCCAGTCATTCCAAAAGCAAactaagaagagaaagagatatgagaagaaaaatgggttgtcaaaaaagagaaaagttgcCAGTGTGTGA 1782 0.3939 MKKHSEAVKNKEGNGTDSNVFASCSFSSLGLDSNLCDQLRERLGFEVPTLVQAQAIPVILSGRHALVNAATGTGKTVAYLAPIVHHLQSYDNRIQRSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLDHLKNTTSFLYSNLHWIIFDEADRILELGFGKDIEEILDLLGSRKTGHDDQEIMVPRHSKIQRQNLLLSATLNEKVNHLAKISLDNPVMIGLDGKKIEPVSTIESLDPSESDEDSEDKYSSKIPTVGDYKVPIQLIQRYMKVPCGSRLPILLSILKHLFEREPLQKVVVFFSTCDAVDFHYSLLSEFQFSSYPQTVEGIQQMFLGCKTFRLHGNMEQEDRRTSFQSFKTEKSALLLSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPVEIDYLQDLEKHGVLLTEYPVLKMLDSFPLYGQKNHTKKSVFLESHPWVLCLQKALEAFIMSKPKMDELARKAFCCWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQTKKRKRYEKKNGLSKKRKVASV 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1630 593 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 180 188 IPR000629 -
Ssu1g1630 593 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 13 591 - -
Ssu1g1630 593 Gene3D - 308 590 IPR027417 -
Ssu1g1630 593 SMART helicmild6 356 438 IPR001650 -
Ssu1g1630 593 MobiDBLite consensus disorder prediction 566 593 - -
Ssu1g1630 593 CDD DEADc_DDX31 35 253 - -
Ssu1g1630 593 Pfam Helicase conserved C-terminal domain 315 438 IPR001650 -
Ssu1g1630 593 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 312 485 IPR001650 -
Ssu1g1630 593 MobiDBLite consensus disorder prediction 570 584 - -
Ssu1g1630 593 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 24 53 IPR014014 GO:0003724
Ssu1g1630 593 SMART DUF4217_3 500 565 IPR025313 -
Ssu1g1630 593 CDD SF2_C_DEAD 297 447 - -
Ssu1g1630 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 459 IPR027417 -
Ssu1g1630 593 Pfam Domain of unknown function (DUF4217) 502 562 IPR025313 -
Ssu1g1630 593 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 252 IPR014001 -
Ssu1g1630 593 SMART ultradead3 44 268 IPR014001 -
Ssu1g1630 593 Pfam DEAD/DEAH box helicase 50 240 IPR011545 GO:0003676|GO:0005524
Ssu1g1630 593 Gene3D - 1 254 IPR027417 -
Ssu1g1630 593 PANTHER RNA HELICASE 13 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1630 Ssu-Chr1 38987838 38993800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1630 25 461 Eukaryotic Initiation Factors Gene Family AT3G19760 26.027 1.36e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1630 K14806 - gmx:100805157 1055.43