Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1628 ATGAAGGCTCCTCCCAATGGTTACTTGCCTAATTCTGGCGAAGGCGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCATTGGTTTCTTTACCTCCTGTTGGAAGTCTTGTGGTTTACTGCCCTCAAGGACACAGTGAGCAAGTTGCAGCATCCATGCAAAAGGAGGCTGACTTCATACCCAGTTACCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCTCTGCATGCTGATCCTGAAACTGACGAGGTCTATGCACAGATGACCCTTCAACCTGTAAATAAATATGACAAGGAAGCAATATTGGCATCAGATATGGGTCTCAAACAAAACCAGCAACCTACTGAGTTCTTTTGCAAAACTCTGACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTGCCTCGTAGAGCAGCTGAGAAAATATTCCCACCTCTGGATTTTTCAATGCAACCTCCAGCTCAGGAGATTGTTGCCAAAGATTTGCATGACAATACATGGACATTTAGACATATTTATCGCGGACAACCAAAGAGGCATCTATTGACGACCGGTTGGAGTGTCTTTGTTAGCACAAAAAGGCTGTTTGCTGGAGATTCAGTTCTTTTTATCAGaGATGAAAAACAACAACTCCTTTTAGGTATAAAGAGAGCTAATAGACAGCAGCCAGCACTATCTTCATCAGTAATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCAGCTCATGCTGCTTCAAATAACAGCccatttactatattttataatCCAAGGGCCAGCCCCGCTGAATTTGTAATTCCATTGGCCAAGTATAATAAGGCTCTGTACAATCAAGTTTCCCTTGGAATGAGATTCAGAATGATGTTTGAGACCGAGGAGTCAGGTGTACGCAGATATATGGGGACAGTCACTGGGGTCAGTGACTTGGATCCTGTGCGATGGAAGAATTCACAGTGGCGCAATCTTCAGgTTGGATGGGATGAATCAACAGCTGGCGAGCGCCCAAGCAGAGTTTCAATTTGGGATATTGAACCAGTGGTGACTCCTTTCTACATTTGTCCTCCTCCATTTTTTAGGCCCAAGTTCCCGAAGCAGCCAGGAATGCCAGATGATGAATCTGACATAGAAAATGCTTTCAAGAGAGCTATGCCCTGGCTTGGAGATGACCTTGGTATGAAGGATGCCTCAAGTTCAATCTTCCCTGGTTTGAGTTTGGTGCAATGGATGAGCATGCAGCAGAATAATCAGTTCTCTGCCGCCCAATCTGGATTTATACCCCCATCCATGCTTTCATCCAATACACTGCATGGTAACCTTAACACTGATGATCCATCCAAATTATTGAGCTTTCAAGCTCCTGTCCTCTCTACACCAAATCTTCAATTTAACAAACCTAATTTACCAAACCAAGTCAACCAATTGCAACAATCCCCAACATCATGGCCTCCgcagcagcaacaacagcaGAAGCTGCAGTCAATGTTGCAAAACCAGCtccagcagcagcagcagcagcagcagagGCAACAGCAGCTGCCTGGACCACAAAACCTGTCACAACCACAGCAACAACCACCCCAGCTGCCTCTACAGAGAGCGCAACAgccacaacaacagcaacagcaGTCGTGTCAACCGACCATCATGAATAATGGGGCAGTTGCTTCTAACCAGATTCCAAATCAGTGTGTACAGCAACCAGTAACCTACTCACAGCTTCAGCAACAGCAATTTCTCTCAGGAAGTATCCCACCCCAACAAAGTTTTCAATCGCCCAATAAGAACACATTGCTAATGACATCCTTACCACAAGACTCACAGTTTCAGCAACAAATGGACCAGCAAGCTAGTCTATTACAGAGGCAGCAGCAGCAACAGACACAGTTGCAACCATCTTCATTGCAGTTATTGCAGCAAAGCCTGTCACAGAGGGCACCACAAATGACTCAAATGTCACAGCAAAACAGCTCAGAGCAACAACCACAGTTACAGTTGCTACAGAAAttgcagcagcagcagcagcaacaacagcaGCAGCAACAGCAACCGCAACTCCTTTCCACTTCTAGCCCACTTTTGCAGTCTCAGCTTCTACAGCAACAAAATACTCATCAACAAAACCAGCAATTACCGCAGCTGCCTCTATCACAGTGTCATCAGCCTCAACAGCTTGGCAACAATGCTTTCTCAATGGAGAAGCTTCTCAGTGGCAACAACTTCTCTTCTTCGTCTATGATGCAAACACAGCCGCTTCCTGTGAACCAACCCCATAATGCACAGAAATCACTAACTAATACTAGAGCTCCCTCTACTCTTACGGATGGAGATGCCCCATCGTGCTCAACTTCACCATCTACTAATAACTGCCAGATATCTCCTCCGAACCTCATGAAAAGAAATCAACAAGTACCGGCCACATTAGGAGGACCTTCGGTAGTTGAACCCACCAATCATCTGATACAGGAGCTTCATAGCAAGTCTGAGATGCAGATCAAACATGAAATACCCAGTGTAAGAGGACCTGACCAGCTGAAGTACAAAGGGACAATTGCTGATCAGCTGGAAGCTTCTTCTGGAACATCTTACTGTATTGATCCTAATAGTATCCACCAGAGCTTCCCACTTCCCAACTTCTGCATGGACGGGGATGTCCAATCACACCCAAGAAATAATCTTCCATTTGCCTCTAATCTTGATGGATTAACACCTGATACTTTGCTCTCAAGAGGTTATGATTCTCAAAAAGATCTTCAAAACTTACTGTCCAATTATGGTGGTGCTCCAAGAGACATTGAAACTGAGCTGTCCACTGCTGCCATTAATTCGCAGCCATTTGGGGTGCCAGACATGCCTTTTAAGCCTGGATGCTCTAGTGATATTGCCATCAATGATACTGAGGTTTTGAATAATGGCTTGTGGGCTAATCAGACTCAAAGAATGCGAACGTATACTAAGGTTCAAAAATGTGGCTCTGTTGGAAGATGTATTGATGTCACCCGTTACAAGGGATATGATGAACTCCGGCATGATTTGGCTAGGATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCAGAGGACCGAGTGGAAACTAGTATATGTGGATCATGAAAACGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCCTCTGCTGAGGTACAGCAAATGAGCTTAGATGGGGATTTAGGTCATGTTTCAGTCCCCAATCAAGCTTGTAGTGGGACAGATAATGGCAATACATGGAGGGGACAGTATGATGATAACTCTGCAGCCTCATTTAATCGATAA 3360 0.4315 MKAPPNGYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYCPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAILASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPAEFVIPLAKYNKALYNQVSLGMRFRMMFETEESGVRRYMGTVTGVSDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDLGMKDASSSIFPGLSLVQWMSMQQNNQFSAAQSGFIPPSMLSSNTLHGNLNTDDPSKLLSFQAPVLSTPNLQFNKPNLPNQVNQLQQSPTSWPPQQQQQQKLQSMLQNQLQQQQQQQQRQQQLPGPQNLSQPQQQPPQLPLQRAQQPQQQQQQSCQPTIMNNGAVASNQIPNQCVQQPVTYSQLQQQQFLSGSIPPQQSFQSPNKNTLLMTSLPQDSQFQQQMDQQASLLQRQQQQQTQLQPSSLQLLQQSLSQRAPQMTQMSQQNSSEQQPQLQLLQKLQQQQQQQQQQQQQPQLLSTSSPLLQSQLLQQQNTHQQNQQLPQLPLSQCHQPQQLGNNAFSMEKLLSGNNFSSSSMMQTQPLPVNQPHNAQKSLTNTRAPSTLTDGDAPSCSTSPSTNNCQISPPNLMKRNQQVPATLGGPSVVEPTNHLIQELHSKSEMQIKHEIPSVRGPDQLKYKGTIADQLEASSGTSYCIDPNSIHQSFPLPNFCMDGDVQSHPRNNLPFASNLDGLTPDTLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTAAINSQPFGVPDMPFKPGCSSDIAINDTEVLNNGLWANQTQRMRTYTKVQKCGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGHVSVPNQACSGTDNGNTWRGQYDDNSAASFNR 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1628 1119 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Ssu1g1628 1119 MobiDBLite consensus disorder prediction 749 805 - -
Ssu1g1628 1119 MobiDBLite consensus disorder prediction 616 635 - -
Ssu1g1628 1119 MobiDBLite consensus disorder prediction 470 555 - -
Ssu1g1628 1119 Gene3D - 289 360 - -
Ssu1g1628 1119 Coils Coil 673 693 - -
Ssu1g1628 1119 CDD B3_DNA 125 217 IPR003340 GO:0003677
Ssu1g1628 1119 Coils Coil 496 523 - -
Ssu1g1628 1119 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Ssu1g1628 1119 Pfam AUX/IAA family 989 1078 IPR033389 -
Ssu1g1628 1119 SMART B3_2 126 228 IPR003340 GO:0003677
Ssu1g1628 1119 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1107 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu1g1628 1119 MobiDBLite consensus disorder prediction 1097 1119 - -
Ssu1g1628 1119 MobiDBLite consensus disorder prediction 652 677 - -
Ssu1g1628 1119 Gene3D - 123 227 IPR015300 -
Ssu1g1628 1119 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Ssu1g1628 1119 ProSiteProfiles PB1 domain profile. 992 1085 IPR000270 GO:0005515
Ssu1g1628 1119 SUPERFAMILY CAD & PB1 domains 1006 1070 - -
Ssu1g1628 1119 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu1g1628 1119 PANTHER AUXIN RESPONSE FACTOR 19 1 1107 - -
Ssu1g1628 1119 Gene3D - 987 1081 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1628 Ssu-Chr1 38901250 38908994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1628 1 488 B3 DNA Binding Superfamily AT1G19220 83.197 0.0 839
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ssu1g1628 AUX_IAA 2.2e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1628 K14486 - gmx:100804628 931.784
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0564 6 8780787 8782099 Ssu1g1628 1 38901250 38908994 PCT