Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1627 ATGGCCAGCGCTCAGCTCACAGCAACCGCGTCATCAATCTCTACGGCGTCGTTTGGAGGGCTTCGACCTTCAGCGGTTCGGTTTCCTTGCGTTGGCCGTGTCAGGATTGACAATCTCTCTCAAAGGTCCTTCCGGGGTTTGGTTGTCAAAGCCGCCACTGTTGTTGCCCCTaagTACACTGCGATTAAGCCTCTGGGCGACAGAGtgcttattaaaattaaggaagCGGACGAGAAAACTGATGGTGGGATTTTGCTTCCCTCAACTGCTCAAACGAAGCCTCAAGGGGGTGAGGTGGTTGCTGTtggagaaggaaagaaagttgGGAAGACAAATGTGGAGATTAGTTTGAAGACTGGTGCGCAAGTTGTGTATTCGAAGTATGCAGGTACTGAGGTGGAATTCAATGGTACAAAGCATCTTATTGTGAAGGATGATGACATTGTTGGTATCCTTGAAACTGATGACATCAAGGATCTTAAACCCTTGAATGATAGAGTACTCATAAAGGTTGCAGAAGCTGAGGAAAAAACTGCTGGTGGTTTGTTGCTTACAGAGGCAACCAAGGAGAAACCTTCAATTGGAACAGTGATAGCCATTGGTCCAGGGCCTCTGGACGAGGAAGGCAACAGAAAACCTTTGTCCGTGACTTCCGGGAACACAGTTTTGTACTCCAAATATGCTGGAAATGACTTCAAGGGCAAAGATGGTTTGGACTATATAACCTTGAGGGTCTCAGATGTCATGGCTGTCCTCTCCTAG 762 0.4554 MASAQLTATASSISTASFGGLRPSAVRFPCVGRVRIDNLSQRSFRGLVVKAATVVAPKYTAIKPLGDRVLIKIKEADEKTDGGILLPSTAQTKPQGGEVVAVGEGKKVGKTNVEISLKTGAQVVYSKYAGTEVEFNGTKHLIVKDDDIVGILETDDIKDLKPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVIAIGPGPLDEEGNRKPLSVTSGNTVLYSKYAGNDFKGKDGLDYITLRVSDVMAVLS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1627 253 PRINTS 10kDa chaperonin signature 62 77 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu1g1627 253 PRINTS 10kDa chaperonin signature 139 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu1g1627 253 PRINTS 10kDa chaperonin signature 118 130 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu1g1627 253 PRINTS 10kDa chaperonin signature 84 105 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu1g1627 253 PIRSF Cpn21 1 253 IPR017416 GO:0006457|GO:0046914|GO:1901671
Ssu1g1627 253 SUPERFAMILY GroES-like 60 153 IPR011032 -
Ssu1g1627 253 CDD cpn10 62 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu1g1627 253 Pfam Chaperonin 10 Kd subunit 160 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu1g1627 253 Pfam Chaperonin 10 Kd subunit 62 151 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu1g1627 253 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu1g1627 253 ProSitePatterns Chaperonins cpn10 signature. 160 184 IPR018369 GO:0005524|GO:0006457
Ssu1g1627 253 SUPERFAMILY GroES-like 159 252 IPR011032 -
Ssu1g1627 253 Hamap Co-chaperonin GroES [groES]. 61 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu1g1627 253 Hamap Co-chaperonin GroES [groES]. 159 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu1g1627 253 Gene3D GroES chaperonin 155 253 IPR037124 GO:0006457
Ssu1g1627 253 Gene3D GroES chaperonin 54 154 IPR037124 GO:0006457
Ssu1g1627 253 ProSitePatterns Chaperonins cpn10 signature. 62 86 IPR018369 GO:0005524|GO:0006457
Ssu1g1627 253 CDD cpn10 160 252 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu1g1627 253 PANTHER GROES CHAPERONIN 1 253 - -
Ssu1g1627 253 SMART Cpn10_2 61 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu1g1627 253 SMART Cpn10_2 159 252 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1627 Ssu-Chr1 38888011 38890341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1627 1 253 Calmodulin-binding Proteins AT5G20720 73.828 3.02e-131 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1627 K04078 - gmx:100814751 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0565 6 8783831 8785649 Ssu1g1627 1 38888011 38890341 PCT