Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1625 atggtgaagcCGAGCGTGGAAAAACCTGCGACGGAGCGAAGTGTTTCCTCGTACAGAGGAGTACGTAAGAGGAAGTGGGGAAAATATGTGTCGGAAATTAGGCTACCCAACAGCCGTCAGAGGATTTGGTTGGGTTCCTACGACAGCGCCGAGAAGGCGGCGCGTGCGTTCGACGCTGCCATGTTCTGCTTACGTGGCAGCGGCGCGAAGTTTAATTTCCCGAGCGACCCGCCGAACATTGCCGGCGGGAGGAGCATGACCCCGTCGCAGATTCAGATCGCCGCCGCCCGTTTCGCCAATTCGGAGCCCCGAAGGGAGTGTTCGGGTCAACTCGTGGAGCCTTCGTTTTCGGATGAGGAAACGACGTCGTTGCCTTTGGACTCGTCGTCTCCTCCTCTCTCAGACGCGACTGTCCAAAACGACACCGAATTTCTAACCGGGTCGTTTCCGGACCTGTTTTCGGATCTCGGGTCGAATAATTTTGTACCCGATTTCCCTTCTTTTCCGGGTTTCGACGATTTTAGCCGCGATTTCTTCGTGCCGGAGCTTCCTAGTTTCGATTACGAAGAAGAGAACTTGGATGGGTTAATAATTGAGGACTCATTCTTGTGGAATTTCTAA 621 0.5298 MVKPSVEKPATERSVSSYRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDAAMFCLRGSGAKFNFPSDPPNIAGGRSMTPSQIQIAAARFANSEPRRECSGQLVEPSFSDEETTSLPLDSSSPPLSDATVQNDTEFLTGSFPDLFSDLGSNNFVPDFPSFPGFDDFSRDFFVPELPSFDYEEENLDGLIIEDSFLWNF 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1625 206 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Ssu1g1625 206 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Ssu1g1625 206 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 206 - -
Ssu1g1625 206 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 3 206 - -
Ssu1g1625 206 MobiDBLite consensus disorder prediction 1 21 - -
Ssu1g1625 206 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Ssu1g1625 206 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Ssu1g1625 206 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Ssu1g1625 206 MobiDBLite consensus disorder prediction 111 133 - -
Ssu1g1625 206 MobiDBLite consensus disorder prediction 114 133 - -
Ssu1g1625 206 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Ssu1g1625 206 CDD AP2 16 74 IPR001471 GO:0003700|GO:0006355
Ssu1g1625 206 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1625 Ssu-Chr1 38782956 38783576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1625 16 206 AP2-EREBP Transcription Factor Family AT1G19210 50.500 1.70e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu1g1625 AP2 2.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1625 - - gmx:100802508 308.916