Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1622 ATGTCGAGCTCATCGGAGTACTCTGAATTTTCCGGCCAGAAACCGGCGAGGTCGCCGGAGAAGTCGAGTTTCTCTCAGACTTGTAGTCTATTGAGTCAATACATCAAGGAGAAGGGTAGCTTTGGAGATCTTACCCTCGGGATGACATGCAGCACCGAACCATGTGGGTCACCTGAGACATCTTGTCATTCTGCGACAACCATGAACTTGTTCCCTACCAAGGAAAACAACTTCACACCAAAGAACCTGACAGCTATGGATTTGCTCTCTCCCCAAGCTTCCTATCGTCCTGCAGAGGAGATTCCAACCTTGATTAATTCCAGTGCAACTGAGTCTGTGAGCAAGGGGGCTAAAACTGCACAGATGACAATCTTTTATGCTGGACAAGTTGTTGTGTTTGATGATTTTCCTGCTGACAAAGCAAGTGAGATCATGTCCTATGCCAGCAAAGGGATCCCCCAAAGCCAGAACAGTTCTCTGTACACCTACACACAGAGCCAGCCTTCATTTCCTCCTAGTTTGGTCAGAACTTCTGCTGATTCAAGTGCTCCAATTATGCCCAGTGTGAATATTGCTGTCACCAATTCCATTCATGAACACCCTCAAGCATCATCCAGACCTGTTGTTTGTGATCTGCCAATTGCTAGAAAAGCTTCACTCCATCGGTTTCTGGAGAAGAGAAAGGATAGAATTGCTGCCAAAGCGCCATATCAAGTAACAAATGGGCCTGCTAACAAGCCAGCTGAATCCATGTCATGGCTTGGGTTGGGTGCTACTTCACCACAAATCTGA 792 0.4684 MSSSSEYSEFSGQKPARSPEKSSFSQTCSLLSQYIKEKGSFGDLTLGMTCSTEPCGSPETSCHSATTMNLFPTKENNFTPKNLTAMDLLSPQASYRPAEEIPTLINSSATESVSKGAKTAQMTIFYAGQVVVFDDFPADKASEIMSYASKGIPQSQNSSLYTYTQSQPSFPPSLVRTSADSSAPIMPSVNIAVTNSIHEHPQASSRPVVCDLPIARKASLHRFLEKRKDRIAAKAPYQVTNGPANKPAESMSWLGLGATSPQI 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1622 263 SMART tify_2 115 150 IPR010399 -
Ssu1g1622 263 Pfam Jas motif 213 238 IPR018467 -
Ssu1g1622 263 Pfam tify domain 118 149 IPR010399 -
Ssu1g1622 263 ProSiteProfiles Tify domain profile. 115 150 IPR010399 -
Ssu1g1622 263 PANTHER PROTEIN TIFY 10A 17 257 - -
Ssu1g1622 263 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 17 257 IPR040390 -
Ssu1g1622 263 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1622 Ssu-Chr1 38457273 38459455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1622 1 258 Tify Gene Family AT1G19180 42.435 2.66e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Ssu1g1622 tify 1.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1622 K13464 - gmx:100801449 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0571 6 8884016 8886046 Ssu1g1622 1 38457273 38459455 PCT