Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1619 ATGGCCTTAGCCCTTTCCTCCACCGCATTGTCAAGTCTTCCAAACAGAGAAATACGTCAAAAGGGTTTCCCCAAAAGAACACCCACATGCTTGAACTTGACAAGAAAAACCCTTACAAGTGCAACAAAAGGAGTGTCAGATGTCTGCGAGCCACTTCCTCCAGATAGGCCCTTGTGGTTCCCTGGTAGTTCACCTCCTGAGTGGCTTGATGGCAGTCTTCCTGGTGATTTCGGTTTTGACCCTCTTGGATTAGGGTCTGATCCAGAGTTGCTAAAGTGGTTTGCTCAGGCGGAACTAATGCATGCTAGATGGGCAATGCTTGCGGTGTTCGGGATTCTCGTTCCAGAGTTGCTTGAAAAGATTGGTTATGTCGAGAACTTCAATTGGTACGATGCTGGTGCGCGAGAGTACTTTGCAGACCCCACAACATTGTTCGTCGTGCAAATGGGCCTGATGGGCTGGGTGGAGGGTCGAAGATGGGCCGATATGGTTAGCCCGGGGAGTGTTGACATTGAGCCCAAAGTGCCACACGTCACGAACCCAAAGCCAGATGTCGGTTACCCCGGTGGGTTGTGGTTTGATCCCATGATGTGGGGACGAGGGTCACCCGAGCCAGTGATGGTGTTGAGGACCAAGGAGATCAAGAATGGTCGACTTGCAATGCTGGCTTTTGTTGGCTTCTGGTTTCAAGCTATTTACACTGGGGAAGGCCCCATTGAAAATTTGATGGCACACATTGCTGATCCTGGTCACTGCAACATTTTCTCGGTAATGATTTCTTGCTTcatttattttaggcttaattattaa 810 0.4852 MALALSSTALSSLPNREIRQKGFPKRTPTCLNLTRKTLTSATKGVSDVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVFGILVPELLEKIGYVENFNWYDAGAREYFADPTTLFVVQMGLMGWVEGRRWADMVSPGSVDIEPKVPHVTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGEGPIENLMAHIADPGHCNIFSVMISCFIYFRLNY 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1619 269 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 258 IPR001344 GO:0009765|GO:0016020
Ssu1g1619 269 SUPERFAMILY Chlorophyll a-b binding protein 55 261 - -
Ssu1g1619 269 Gene3D Chlorophyll a/b binding protein domain 66 251 - -
Ssu1g1619 269 Pfam Chlorophyll A-B binding protein 65 231 IPR022796 -
Ssu1g1619 269 PANTHER PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 6, CHLOROPLASTIC 1 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1619 Ssu-Chr1 38358337 38359835 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1619 54 258 Chloroplast and Mitochondria Gene Families AT3G61470 66.341 1.82e-100 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1619 K08908 - gmx:100812066 519.62