Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1618 ATGACACCTCTGACATCCCAAACCCAAAAAAAGCAAGCCTCagataaaacaacaacaacaacaacaacgacaacgaCGACCTTAATCTCTCCGAGCAGCGGTCCATTATTCCTCCAAGCACGCAATGGCCGCTGTTCCcgtccaccaccaccacctcctcctattcttcttcttgctttcttctctctccctctcttccgCGTCCGAAACCCAATCCCTCCTCCGCCTGAAACAATCCCTGGCCAACGCCGACCGCTCCCTCGCCTCGTGGATCCCCAACGTCTCCCCGTGCTCCGGCACCTGGCTCGGCGTCGTCTGCTTCAACAGCGTCGTGACGGGCCTCCGCCTGGCCGACCTGGGCCTGTCCGGCCCAATCGACGTGGACGCCCTGGCCGAGATCCGCGGCCTGCGCACCCTCAGCTTCGTCAACAACTCCTTCTCCGGCCCAATCCCGGAGTTCCACAAGCTCGGCGCCATCAAGTCCCTTCTCCTGACCCAAAACCAATTCTCCGGGCCCATCCCCTCCGACTTCTTCTCCCCACTAAACTCCCTCAAAAAAGTATACCTCTCGGGAAACAACTTCTCCGGCAACATCCCCCAATCCCTGACCCAACTCGACCTCCTCGTAGAGCTCCACCTCGCGTTCAACTCCTTCTCCGGCCCAATCCCAAACTTCAACCAAAACCTAAATTCCCTGAACCTCTCCAACAACAAGCTCCAGGGCCCCATCCCCGAGACACTAGCAAAATTCAACGCCGAATCCTTCACCGGAAACGAAGGCCTCTGCGGGAAGCCCCTGGACAAGCCTTGCGGCATcgattcttcttcttcttcttcttcgtcgtCGTCGCCTCACTCGCCGCCGAGCAACGTCAACGGCGAGCGAGCGCACGGCTCGAGCTGGCCGGCGAAGGCGGTTGCGGCGCTGGCGGTGGCTGCGGTGGCCGCGGTGATATTCCTCTTGGCGAAGtcgcggcggcggcggcggcggagggAGAGGCAGTTCAGCGCGGTGAGCAGGGGCGACGGCGGCTCGGTGGAGGTGCAGGTGCCGAGCGTGAGGGCGGGGAGGAGGGAGCCGGCGAGGAGCGGGGAGATAGTGATGGTGAACGAGGAGAGGGGGTGTTTGGGCTGCCGGACCTGATGAAGGCCGCGGCGGAGGTGCTGGGCAATGGGGGGCTGGGGTCCGCGTACAAGGCGGCCATGGCCAGCGGATTGTGCGTCGTGGTCAAGAGGATGAGGGAGATGAATAAGATCGGGAGGGACGTGTTTGACGCGGAGATGAGGCAGTTTGGCAGGATACGGCACCGCAACGTCATGACGCCGCTCGCTTACCATTACCGCAGAGAGGAGAAGCTCTTCATTACCGAGTACATGCGCAAAGGAAGCTTGTTGTATGTCCTGCACGGTGACAGAGGCACATCCCATGCTGAACTGACTTGGCCTACCCGTTTGAAGATCGTGAAGGGAATTGCAAGAGGGTTGAGCTTCCTTTACACTGAATTTTCTACCTACGACCTGCCCCACGGGAACCTCAAGTCTAGCAATGTTCTACTAACTGATGATTACGAGCCCCTCTTGAGTGACTACGCCTTCCATCCACTAATCAACCACACCGTCGCCGTGCAGGCATTGTTTGCCTTCAAGTCCCCAGATTATGTACAGAGCCAGAAAGTTTCACAGAAGACCGATGTTTATTGCCTTGGACTCATCATTCTTGAGATCGTCACGGGGAAGTTCCCTTCTCAGTATCACAGCAATGGCAAGGGCGGGACTGACGCCGTGCAATGGGTCCTCACTGCAATTTCTGAGAGAAGAGAAGCAGAGTTGATTGATTCAGAGTTACAGAACGACACGAAATCGCGCAATCACATGCTGCAGCTTCTCCAAATTGGGGCTGCTTGCACCGAAAGCAACCCCGAAGAAAGACTAAACATGAAGGAAGCTATTAGAAGGATAGAGGGGGTGCAGGTTTAA 1977 0.5341 MTPLTSQTQKKQASDKTTTTTTTTTTTLISPSSGPLFLQARNGRCSRPPPPPPPILLLAFFSLPLFRVRNPIPPPPETIPGQRRPLPRLVDPQRLPVLRHLARRRLLQQRRDGPPPGRPGPVRPNRRGRPGRDPRPAHPQLRQQLLLRPNPGVPQARRHQVPSPDPKPILRAHPLRLLLPTKLPQKSIPLGKQLLRQHPPIPDPTRPPRRAPPRVQLLLRPNPKLQPKPKFPEPLQQQAPGPHPRDTSKIQRRILHRKRRPLREAPGQALRHRFFFFFFFVVVASLAAEQRQRRASARLELAGEGGCGAGGGCGGRGDIPLGEVAAAAAAEGEAVQRGEQGRRRLGGGAGAEREGGEEGAGEERGDSDGERGEGVFGLPDLMKAAAEVLGNGGLGSAYKAAMASGLCVVVKRMREMNKIGRDVFDAEMRQFGRIRHRNVMTPLAYHYRREEKLFITEYMRKGSLLYVLHGDRGTSHAELTWPTRLKIVKGIARGLSFLYTEFSTYDLPHGNLKSSNVLLTDDYEPLLSDYAFHPLINHTVAVQALFAFKSPDYVQSQKVSQKTDVYCLGLIILEIVTGKFPSQYHSNGKGGTDAVQWVLTAISERREAELIDSELQNDTKSRNHMLQLLQIGAACTESNPEERLNMKEAIRRIEGVQV 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1618 658 MobiDBLite consensus disorder prediction 74 170 - -
Ssu1g1618 658 MobiDBLite consensus disorder prediction 336 373 - -
Ssu1g1618 658 MobiDBLite consensus disorder prediction 332 373 - -
Ssu1g1618 658 Gene3D Transferase(Phosphotransferase) domain 1 460 657 - -
Ssu1g1618 658 MobiDBLite consensus disorder prediction 1 51 - -
Ssu1g1618 658 Gene3D Phosphorylase Kinase; domain 1 389 459 - -
Ssu1g1618 658 PANTHER LRR RECEPTOR-LIKE KINASE 332 658 - -
Ssu1g1618 658 SUPERFAMILY Protein kinase-like (PK-like) 387 653 IPR011009 -
Ssu1g1618 658 MobiDBLite consensus disorder prediction 225 239 - -
Ssu1g1618 658 MobiDBLite consensus disorder prediction 191 253 - -
Ssu1g1618 658 MobiDBLite consensus disorder prediction 1 39 - -
Ssu1g1618 658 ProSiteProfiles Protein kinase domain profile. 383 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1618 658 Pfam Protein kinase domain 387 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1618 658 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 332 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1618 Ssu-Chr1 38350992 38355509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1618 373 657 Receptor kinase-like Gene Family AT5G20690 67.719 5.79e-143 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu1g1618 Pkinase 4.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1618 - - gmx:100790660 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0573 6 8913078 8915558 Ssu1g1618 1 38350992 38355509 PCT