Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1609 ATGGCATGTGAGTTGTCCAACGAAGTTGCAGCCAGCAACACGCTCCAATCCATATGCTACAAGCGCGGTTTCCTCCAGCTTCTCGATCAGAGGAAGCTTCCCCTGGAAACAATTTACTTGGAGATTCGGGATTCAACAGATGGATGGAATGCTATACGGGATATGGTGGTCCGGGGAGCACCGGCTATTGCAATTGCAGCGGCACTCTCTTTGGCTGTGGAGGTGTTCAATTTAGGTGATTTTAATGGATCAGCTGGTGATGCCGTTTCCTTCCTGCAGAAGAAATTAGAATATCTTGTCTCAAGTCGGCCAACTGCAGTGAACCTATCAGATGCTGCGACAAAACTGAAAGAAATCATATCAAATGCTGCACCTACCACCTCAGAGGGCCGGAGTGTTTTCCAGGCATATATAGAAGCTGCTGAAGTTATGCTTGAGGATGATGTTGCCTCAAATAGAGCTATTGGTTCTTACGGAGCTAGTTGTATTCAACAACAAACAGAGAAACAAAAACTTTCTGTTTTGACTCATTGCAATACTGGAAGTCTAGCCACAGCTGGATATGGTACTGCTCTGGGTGTTATTCGTGCACTTCACAGTGGAGGAGTTTTAGAAAGGGCTTATTGCACAGAAACACGCCCATTCAATCAAGGATCTAGACTTACTGCATTTGAGTTGGTGCATGAAAAAATACCAGCAACTCTTATTGCTGATTCTGCTGCAGCTGCATTAATGAGAGCAGGACGGGTGGATGCTGCTGTTGTTGGGGCAGATCGTGTTGCATCAAACGGTGACACAGCCAACAAAATTGGAACCTACAGCGTTGCCTTGTGCGCCAAGTTTCATAATGTACCTTTTTATGTGGCTGCACCCCTGACTTCCATTGATCTGTCACTTTCTTCTGGACAAGAAATTGTCATTGAGGAGAGATCTCCCAAGGAATTATTGAACACACATGGAGGACTTGGAGAGCAGATTGCTGCCTCAGGAATCTCTGTGTGGAACCCAGCTTTTGATGTTACTCCTGCTAATCTAATATCTGGGATCATCACTGAGAAGGGTGTCATTACGAAGACATCTGCTGGTGATGCTTTTGACATAAAAGCTTTCGTACAGAAAACAGGTTAA 1128 0.4512 MACELSNEVAASNTLQSICYKRGFLQLLDQRKLPLETIYLEIRDSTDGWNAIRDMVVRGAPAIAIAAALSLAVEVFNLGDFNGSAGDAVSFLQKKLEYLVSSRPTAVNLSDAATKLKEIISNAAPTTSEGRSVFQAYIEAAEVMLEDDVASNRAIGSYGASCIQQQTEKQKLSVLTHCNTGSLATAGYGTALGVIRALHSGGVLERAYCTETRPFNQGSRLTAFELVHEKIPATLIADSAAAALMRAGRVDAAVVGADRVASNGDTANKIGTYSVALCAKFHNVPFYVAAPLTSIDLSLSSGQEIVIEERSPKELLNTHGGLGEQIAASGISVWNPAFDVTPANLISGIITEKGVITKTSAGDAFDIKAFVQKTG 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1609 375 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 13 372 - -
Ssu1g1609 375 TIGRFAM salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 16 358 IPR005251 -
Ssu1g1609 375 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 15 367 IPR005251 -
Ssu1g1609 375 Gene3D - 205 370 IPR042529 -
Ssu1g1609 375 Gene3D - 13 204 IPR027363 -
Ssu1g1609 375 TIGRFAM eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 43 358 IPR011559 GO:0044249
Ssu1g1609 375 Pfam Initiation factor 2 subunit family 57 357 IPR000649 GO:0044237
Ssu1g1609 375 SUPERFAMILY NagB/RpiA/CoA transferase-like 13 360 IPR037171 -
Ssu1g1609 375 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 13 372 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1609 54 373 Eukaryotic Initiation Factors Gene Family AT2G05830 78.505 2.61e-176 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1609 K08963 - gmx:100799311 625.165