Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1600 ATGGCCTCGGGGATCGGGTCCCGCGAGAAGGAGCCGGCGTCCCCGCGCGACAGGGACGGGCACGGCACGCACACGGCGAGCACCGCGGCGGGGTCACACGTGGCGAACGCGAGCCTGCTCGGGTACGCGAGCGGGACCGCACGCGGGATGGCGCCGCAGGCACGTGTGGCGGCGTACAAGGTGTGCTGGGCCGACGGCTGCTTCGCGTCCGACATTCTCGCCGGGATGGACCGCGCGATCGAGGACGGCGTCGACGTGCTCTCGCTCTCCCTCGGCGGCGGCTCCGCGCCGTACTTCCGCGACACCATCGCCGTCGGCGCCTTCGCGGCGGTGGAGAGGGGGATCTTCGTGTCCTGCTCCGCCGGGAACAGCGGGCCGGCGAAGGCCTCGCTCGCCAACGTGGCGCCGTGGATAATGACCGTCGGGGCGGGGACCCTGGACCGCGATTTCCCCGCCTACGCCGTGCTTGGTAACAGAAAACGGTTCGGTGGGGTTTCGCTTTACAGTGGAAAGGGAATGGGGGGTGAACCGGTTGGTTTGGTTTACAACAAAGGGTCGAACCAGTCGGGGAGCATTTGCATGCCCGGTTCGCTCGACCCGGGTTTGGTTCGTGGGAAGGTGGTGGTTTGCGATAGGGGGATTAACGCGCGCGTGGAGAAGGGTAAGGTGGTGCGCGACGCCGGCGGGGTGGGGATGATTCTCGCGAACACGGCGGCGAGTGGGGAGGAGTTGGTGGCGGATAGTCACCTGCTACCGGCTGTGGCGGTTGGGAGGATCGTGGGGGACCAGATCAGGGAGTATGCCGCATCGGATCCCAATCCAACGGCGGTTCTCGGTTTCCGTGGAACGGTTTTGAACGTTAGACCTTCCCCTGTTGTTGCAGCTTTCAGTTCCCGAGGGCCCAATATGGTTACAAGACAGATCCTGAAACCGGATGTTATTGGGCCCGGGGTTAACATCTTAGCCGGGTGGTCCGAAGCTATTGGGCCCTCTGGGATGTCTGACGACACTCGCAAAACAGAGTTCAACATTATGTCAGGTACGTCGATGTCTTGTCCACACATAAGTGGCTTGGCTGCGTTGTTGAAAGCAGCGCATCCGGAGTGGAGTCCCAGTGCGATAAAATCTGCGCTCATGACGACAGCTTACACTCATGACAACACCAAGTCCCCACTTCGGGACGCCGCAGGTGGTGCCTTTTCAACGCCGTGGGCTCACGGTGCGGGCCACGTGAACCCACACAACGCAATTTCCCCTGGTCTTGTCTACGATGCCTCAACCAGGGACTACGTTCAGTTCCTCTGCTCCTTGGACTACACCCCTGACCACATACAACTCATCGTGAAGCGCCCCGGGGTGAACTGCACCAGGAAGTTCTCTGATCCTGGCCAATTGAATTACCCCTCCTTCTCGGTCTTGTTTGGCGGCAAGAGCGTCGTGAGGTACACGCGCGTTTTGACCAACGTCGGCGACGCCGGCTCCGTCTACGACGTCACCGTGGACGCGCCGGCCGCGGTGGGGGTAGCGGTGAGCCCCACCAGGCTCGTGTTTGGAAAAGTAGGGGAAAGGAAAAGCTTCACGGTGACCTTCGTGTCCAAGAAGGGCGCCGGTGATTCCGCTGGGTATGGATTTGGTAGCATTATGTGGAGCAATGCGCAACACCAAGTTAGGAGCCCAGTGGCTTTTTCTTGGACTTTGTTGTGA 1704 0.6156 MASGIGSREKEPASPRDRDGHGTHTASTAAGSHVANASLLGYASGTARGMAPQARVAAYKVCWADGCFASDILAGMDRAIEDGVDVLSLSLGGGSAPYFRDTIAVGAFAAVERGIFVSCSAGNSGPAKASLANVAPWIMTVGAGTLDRDFPAYAVLGNRKRFGGVSLYSGKGMGGEPVGLVYNKGSNQSGSICMPGSLDPGLVRGKVVVCDRGINARVEKGKVVRDAGGVGMILANTAASGEELVADSHLLPAVAVGRIVGDQIREYAASDPNPTAVLGFRGTVLNVRPSPVVAAFSSRGPNMVTRQILKPDVIGPGVNILAGWSEAIGPSGMSDDTRKTEFNIMSGTSMSCPHISGLAALLKAAHPEWSPSAIKSALMTTAYTHDNTKSPLRDAAGGAFSTPWAHGAGHVNPHNAISPGLVYDASTRDYVQFLCSLDYTPDHIQLIVKRPGVNCTRKFSDPGQLNYPSFSVLFGGKSVVRYTRVLTNVGDAGSVYDVTVDAPAAVGVAVSPTRLVFGKVGERKSFTVTFVSKKGAGDSAGYGFGSIMWSNAQHQVRSPVAFSWTLL 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1600 567 ProSitePatterns Serine proteases, subtilase family, serine active site. 347 357 IPR023828 -
Ssu1g1600 567 Gene3D - 147 285 - -
Ssu1g1600 567 PANTHER CUCUMISIN-RELATED 6 564 - -
Ssu1g1600 567 MobiDBLite consensus disorder prediction 1 28 - -
Ssu1g1600 567 CDD PA_subtilisin_like 153 276 - -
Ssu1g1600 567 Gene3D - 434 564 - -
Ssu1g1600 567 PRINTS Subtilisin serine protease family (S8) signature 17 30 IPR015500 -
Ssu1g1600 567 PRINTS Subtilisin serine protease family (S8) signature 346 362 IPR015500 -
Ssu1g1600 567 CDD Peptidases_S8_3 1 383 IPR034197 -
Ssu1g1600 567 Pfam PA domain 193 264 IPR003137 -
Ssu1g1600 567 Pfam Fibronectin type-III domain 464 561 IPR041469 -
Ssu1g1600 567 Gene3D Peptidase S8/S53 domain 9 430 IPR036852 GO:0004252|GO:0006508
Ssu1g1600 567 Pfam Subtilase family 10 387 IPR000209 GO:0006508|GO:0008236
Ssu1g1600 567 ProSiteProfiles Serine proteases, subtilase domain profile. 1 417 - -
Ssu1g1600 567 SUPERFAMILY Subtilisin-like 12 421 IPR036852 GO:0004252|GO:0006508
Ssu1g1600 567 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 6 564 IPR045051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1600 Ssu-Chr1 38025495 38027291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1600 1 564 Subtilisin-like Serine Gene Family AT2G05920 74.690 0.0 874
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1600 - - gmx:100797543 1005.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1600 1 38025495 38027291 Ssu1g1600 1 38025495 38027291 ECH
Ssu6g0583 6 9072516 9074720 Ssu1g1600 1 38025495 38027291 PCT