Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1599 ATGACCCTTATGAAAATGATATGGAAATCCATCTTCCCCGGTTGTTATAAGGGTGAGTATCCCTCTCCCAAGCCCAAGAAAGTGGTGGCTACAAAGCCAAATTCTTCTCACAGGATTTCTGTAACGGATTTGAGTAATTATCCAAGCACAACTTTTTCAGAGGATCTCTCCATTTCTCTAGCGGGAACTAACCTGCATGTTTTTACACTTGCTGAGCTCAAGATTATAACCCAGCAATTCTCTTCAAGTAATTTTCTAGGAGAAGGTGGGTTCGGACCAGTGCATAAGGGGTTCATTGATGACAAGCTTAGGCATGGTCTTAAGGCTCAACCGGTGGCTGTTAAACTCTTGGACTTGGATGGCTCTCAGGGGCATAAAGAGTGGTTGACTGAAGTTGTTTTTCTGGGGCAACTAAGGCATCCACATCTCGTGAAGCTGATAGGATACTGCTGTGAAGAAGAGCACAGGCTTCTGGCATATGAATATTTACCAAGAGGCAGCTTGGAAAATCATTTATTCAGAAGATTCTCGGCATCACTACCATGGTCAACGAGAATGAAAATTGCTGTTGGAGCTGCGAAGGGTCTAGCCTTTCTTCATGAAGCCGAGAAGCCAGTCATCTATAGAGATTTCAAAGCTTCCAACATCTTGTTAGACTCTGATTACAATGCAAAACTCTCTGATTTTGGCTTGGCAAAAGACGGTCCCGAAGGAGATGACACCCACGTTTCAACCCGAGTTATGGGCACACACGGCTACGCAGCCCCAGAATATGTCATGACAGgTCACTTGACAGCAATGAGTGACGTGTATAGTTTTGGAGTAGTGCTGTTGGAGCTGCTAACAGGGAGAAGGTCAGTGGACAAGAATCGTCCTCCAAGGGAACAGAACCTAGTGGAGTGGGCAAGGCCCATGTTAAATGATTCTAGAAAACTTGGCAGGATAATGGATCCTAGACTTGAGGGACAATATTCTGAGATGGGGACCAAAAAAGCAGCAGCATTGGCTTTTCAATGCCTCAGCCACAGGCCAAGGAGCAGACCCTCAATGAGCACAGTGGTTAAGGCTCTGGAGCCACTCCAGGATTTTGATGATATTCCAATCGGAACATTTGTTTACACAGCTCCACCAGATAATGAAGTGCATAAAGATGCAAAGGAATGTGAAACACCTAAGAGGAGGGAAAATAATGGTCACCTTCACAGGAACCACCATCTCTACAATAATGGCCACAGGCATCATCCACTTAAGTCCCCCAAGTCCCCAAAGCCACAATCACAGTCACGTTCGCCAAATGATCACAAACACAGAATTGGCAGAGGAAGTGAATCAAACTCTCCTCCACCACATGTGAAAAGGCCAGGAATCATTGCCTAA 1377 0.4532 MTLMKMIWKSIFPGCYKGEYPSPKPKKVVATKPNSSHRISVTDLSNYPSTTFSEDLSISLAGTNLHVFTLAELKIITQQFSSSNFLGEGGFGPVHKGFIDDKLRHGLKAQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHPHLVKLIGYCCEEEHRLLAYEYLPRGSLENHLFRRFSASLPWSTRMKIAVGAAKGLAFLHEAEKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTHGYAAPEYVMTGHLTAMSDVYSFGVVLLELLTGRRSVDKNRPPREQNLVEWARPMLNDSRKLGRIMDPRLEGQYSEMGTKKAAALAFQCLSHRPRSRPSMSTVVKALEPLQDFDDIPIGTFVYTAPPDNEVHKDAKECETPKRRENNGHLHRNHHLYNNGHRHHPLKSPKSPKPQSQSRSPNDHKHRIGRGSESNSPPPHVKRPGIIA 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1599 458 SUPERFAMILY Protein kinase-like (PK-like) 55 358 IPR011009 -
Ssu1g1599 458 MobiDBLite consensus disorder prediction 371 458 - -
Ssu1g1599 458 CDD STKc_IRAK 86 360 - -
Ssu1g1599 458 Pfam Protein tyrosine and serine/threonine kinase 84 357 IPR001245 GO:0004672|GO:0006468
Ssu1g1599 458 Gene3D Phosphorylase Kinase; domain 1 40 162 - -
Ssu1g1599 458 MobiDBLite consensus disorder prediction 397 419 - -
Ssu1g1599 458 PANTHER OS01G0588500 PROTEIN-RELATED 23 411 - -
Ssu1g1599 458 ProSiteProfiles Protein kinase domain profile. 80 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1599 458 MobiDBLite consensus disorder prediction 379 396 - -
Ssu1g1599 458 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 23 411 - -
Ssu1g1599 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Ssu1g1599 458 Gene3D Transferase(Phosphotransferase) domain 1 163 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1599 Ssu-Chr1 37963611 37966689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1599 66 395 Glycoside Hydrolase AT3G07070 50.150 2.26e-103 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu1g1599 PK_Tyr_Ser-Thr 3.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1599 - - gmx:100797003 820.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1599 1 37963611 37966689 Ssu1g1599 1 37963611 37966689 ECH
Ssu6g0585 6 9138974 9141216 Ssu1g1599 1 37963611 37966689 PCT