Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1585 ATGATGAATGGAAGGAACAGGTTCCCCTTTACTCCATCACAGTGGCAAGAGCTTGAACATCAAGCTCTTATCTACAAGTACATGGCTTCAGGTATTTCCATTCCTCCTGATCTTCTCTTCACCATAAAAAGGAGCTACTTTGATTCCCCTCTGTCCTCAAGGCTTTTGCCTAACCAGCCACAGCACTTTGGATGGAACTACCTGCAGATGGGTTTGGGAAGAAAAATAGACCCTGAGCCAGGTAGGTGCAGAAGAACTGATGGGAAGAAGTGGAGGTGCTCAAAAGAGGCATACCCAGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACATCAACTACAACAAATACAAATGCTTCAACACAAGCAATCTCGTCAATCACCAAAAACAATAACACCCTTTCACCTCTTGCATCATCTGAGACACACCCTCAACACTCTTGCTATGGCTCCTTTCTCTATCACCACCCTCCATCAAGGTCCTCTGGCATTGGCTTGTCATTTGAAGACAACAGTGCTCCCTTGTTCCTTGACACTGGCTCTTGCTCTCAGTCCAACACAGATTGCAGGAGCAGGTATGTTTATGGAGTGAAAGAGGAGGTGGATGAGCATGCTTTCTTCACAGAACCATGTGGTATAATGAAAAGCTTCTCTGGTTCCTCTATGGATGAGTCTTGGCAACTCACACCATTGACTATGAGctcctcatcttcttcttccaagCAGAGGAGTTCCTTTGGCTTGTCCAATGATTACTCTTGCTTGCAACTTCAGAGCCACTCAAAGCAGCGAGAGCAACAAGATCAGGGTTGCTACATGTTAGGTGGTGGTGCTCCACTTGGGAAAGAAGAACCTCAGAAAACCGTTCATCGCTTCTTTGATGAATGGCCCCACAAAGGAAGAGAAGGCTCTTGGCTTGATTTGGATGACAAATCTTCCACAACCCAACTTTCAATTTCCATTCCTACCTCTTCTCATGATTTTCCAACCTTCAGTTCCTGA 1044 0.4425 MMNGRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRSYFDSPLSSRLLPNQPQHFGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTSTTTNTNASTQAISSITKNNNTLSPLASSETHPQHSCYGSFLYHHPPSRSSGIGLSFEDNSAPLFLDTGSCSQSNTDCRSRYVYGVKEEVDEHAFFTEPCGIMKSFSGSSMDESWQLTPLTMSSSSSSSKQRSSFGLSNDYSCLQLQSHSKQREQQDQGCYMLGGGAPLGKEEPQKTVHRFFDEWPHKGREGSWLDLDDKSSTTQLSISIPTSSHDFPTFSS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1585 347 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ssu1g1585 347 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ssu1g1585 347 PANTHER - 2 340 IPR031137 GO:0005634|GO:0006351|GO:0032502
Ssu1g1585 347 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Ssu1g1585 347 Pfam WRC 78 120 IPR014977 -
Ssu1g1585 347 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ssu1g1585 347 PANTHER GROWTH-REGULATING FACTOR 6 2 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1585 Ssu-Chr1 37652607 37653862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1585 7 120 GRF Transcription Factor Family AT3G13960 71.053 1.36e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Ssu1g1585 WRC 7.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1585 - - gmx:100781613 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1585 1 37652607 37653862 Ssu1g1585 1 37652607 37653862 ECH
Ssu6g0597 6 9321487 9323264 Ssu1g1585 1 37652607 37653862 PCT