Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1582 atgGAAAGGAAGGTCTGTTGTGAAAAAGAAGGGGCTTGGTCTTCTGAGGAAGATGAAATCCTTACGAGCTACGTTCAAGGTCATGGGGAAAGAAATTGGAGAGACCTTCCTAAAAAAGCCGgCATAGGGTTGGAACGATGCGGTGAGAGTTGCAAGCACCGATGGTTGAACTATCTCAAACCGACGGACCATAGAGGAAACATTTCTTTGGACGAAGAAGAGCTCATAATCAGACTGCATAAGCTCTTGGGGAATAGataCGTTGCTGAGCTTTCAGACAGTAACGCAAACATACCTTAA 300 0.4433 MERKVCCEKEGAWSSEEDEILTSYVQGHGERNWRDLPKKAGIGLERCGESCKHRWLNYLKPTDHRGNISLDEEELIIRLHKLLGNRYVAELSDSNANIP 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1582 99 ProSiteProfiles Myb-like domain profile. 9 59 IPR001005 -
Ssu1g1582 99 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 87 - -
Ssu1g1582 99 Pfam Myb-like DNA-binding domain 11 59 IPR001005 -
Ssu1g1582 99 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 63 IPR017930 -
Ssu1g1582 99 SUPERFAMILY Homeodomain-like 11 88 IPR009057 -
Ssu1g1582 99 CDD SANT 12 59 IPR001005 -
Ssu1g1582 99 PANTHER TRANSCRIPTION REPRESSOR MYB6-LIKE 2 87 - -
Ssu1g1582 99 Gene3D - 10 62 - -
Ssu1g1582 99 SMART sant 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1582 Ssu-Chr1 37566994 37567841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1582 1 89 MYB Transcription Factor Family AT4G21440 54.839 1.26e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu1g1582 Myb_DNA-binding 3.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1582 K09422 - ccaj:114915461 129.798