Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1576 ATGAATAATGAGGAAGTGGAAAATGTGCTTCCACTATTTGAAGGGGCAGTTGAGACTGGAAGAATTAAGAGGAAGTCTCTGAAGAACTGGCTGGTGAAAGTCTACTTTGAACGCCGATCACTTGTACATTCACTAAATGATACCAAAACAGCTGTTGATGACTTGAATACGCTTGCTTCCGTAATTGTGCTTATTGTGATCATTATTGTGTGGCTTCTTATAATGGGTTTCTTAACAACTCAAgttcttgtttttatttcatcCCAGCTTTTACTTGTGGTTTTCATGTTTGGCAACACAGCTAAGACAGTTTTTGAAgctattatatttgtttttgtgaTGCACCCTTACGATGTTGGTGATCGCTGCGTCATTGATGGTGTTCAGATGATTGTGGAAGAGATGAACATACTGACTACAGTCTTTTTGAGATATGACAATGAAAAGATTTTCTATCCAAATTCAGTTCTAGCAACCAAGCCAATCAGTAACTTCTACAGGAGTCCAGAAATGAGTGATTCAGTTGAATTTGTTGTTGATGTTTCTACTTCTATTGAAAGTATTGGAGCTTTAAAGGCGAAGTTAAAAGCATATTTGGAGAGTAAGCCTCAATACTGGCGCCCCTACCACAGTGTGTTGGTTAAGGATATTGAGAACGTCAATCAGATGAAAATGGGTCTATCTGTTACTCACACCATAAATTTTCAGAATCATGGGGATAAGAGCAGCCGAAGATCTGAATTAGTCCTAGAGTTAAAGAAAATTCTTGAAGaccttaatattaaatatcatctgCTGCCACAAGAAGTTCATCTAAGTTATGTAAGGTCAGAAGACTAA 840 0.3548 MNNEEVENVLPLFEGAVETGRIKRKSLKNWLVKVYFERRSLVHSLNDTKTAVDDLNTLASVIVLIVIIIVWLLIMGFLTTQVLVFISSQLLLVVFMFGNTAKTVFEAIIFVFVMHPYDVGDRCVIDGVQMIVEEMNILTTVFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSVEFVVDVSTSIESIGALKAKLKAYLESKPQYWRPYHSVLVKDIENVNQMKMGLSVTHTINFQNHGDKSSRRSELVLELKKILEDLNIKYHLLPQEVHLSYVRSED 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1576 279 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1 276 - -
Ssu1g1576 279 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 1 276 IPR016688 -
Ssu1g1576 279 Pfam Mechanosensitive ion channel 57 262 IPR006685 GO:0016020|GO:0055085
Ssu1g1576 279 SUPERFAMILY Sm-like ribonucleoproteins 106 165 IPR010920 -
Ssu1g1576 279 Gene3D - 116 165 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1576 Ssu-Chr1 37312074 37314182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1576 1 273 Mechanosensitive Ion Channel Family AT5G12080 57.143 5.67e-116 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1576 K22048 - gmx:100777332 488.804