Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1574 ATGATGGAAGAAACAAGAGTCGTGGCAGACAAGAAAGTGACAAAGAACGATGTTGTTTTACGAATTTCAGACACTGAAGAAGCCATGTACGCAAAGAAGGAACAAAGAGATTCTAGAACTTTCCCAGTAGCTGAAAGCAGTTCCCTCTCTCCTCAGAACAATACCCAGATGGGTAAAGGGTTCAGGGATTCACGTGCTGAACTCATAGAGCTTGAGAATCTCAGAAACAAGGGTCAAGTTTCCATAGAATTGGTGACAACTACAAAAAGGTTGACGGGTCGGTCGGAATTTTCGAAGCCAAAGTCCAGAATGGTGGAACCACCATATCCAAAAGATGCAAACTTTGTTGAAGAAAAGGCTCAAACGACAAGTTCCAATTCATCTGCAAGGAATTCTCCTAACAAGGGTGTTGCAGTTTCTACTCCAGGGGATGTTCCTGAAGCAAATATTGGTGTTGCAGTTTCTACTCGAGGggaagaagatgatgatgatgaagtgTACCAGACTGCAAATATTGAAGTGAGCAAGAGATCTGGTAAGAAGTGGGGAGTAATGGGCTTTGTTGAGTGGTTTGCTTTTGTTTGCATAATGGGGTTTTTGATTGCAAGCTTGACAGTTCATAAGTTGCAGCATAGGGGAATTTGGGGTTTGGAACTGTGGAAATGGTGTGTGTTGGTGTTGGTTATACTATGTGGTAGACTGGTCACTGAGTGGTTTATCAATGTTTTGGTGTTTTCGACTGAAAGGAACTTCTTGTTTAAGAAGAaggttttgtattttgtttatggTGTGAAGAACAGTGTTCAGGCCTTTATATGGCTAAGTTTGGTCCTTTTGACATGGTATCTGCTTTTCAACCATGGAGTGAAGAGAACCAGAAAGGTTACTAGGATTCTTAATTACATTACTAGAGCCATTGCTTCTTGTCTTATTGGAGCAGCTATATGGTTAGCAAAGACATTGTTGATAAAGCTGTTagcttcaaattttcaatctacTAGGTTTTTTGACAGGGTTCAATAA 1023 0.3842 MMEETRVVADKKVTKNDVVLRISDTEEAMYAKKEQRDSRTFPVAESSSLSPQNNTQMGKGFRDSRAELIELENLRNKGQVSIELVTTTKRLTGRSEFSKPKSRMVEPPYPKDANFVEEKAQTTSSNSSARNSPNKGVAVSTPGDVPEANIGVAVSTRGEEDDDDEVYQTANIEVSKRSGKKWGVMGFVEWFAFVCIMGFLIASLTVHKLQHRGIWGLELWKWCVLVLVILCGRLVTEWFINVLVFSTERNFLFKKKVLYFVYGVKNSVQAFIWLSLVLLTWYLLFNHGVKRTRKVTRILNYITRAIASCLIGAAIWLAKTLLIKLLASNFQSTRFFDRVQ 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1574 340 MobiDBLite consensus disorder prediction 41 59 - -
Ssu1g1574 340 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 12 340 IPR016688 -
Ssu1g1574 340 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 12 340 - -
Ssu1g1574 340 MobiDBLite consensus disorder prediction 30 59 - -
Ssu1g1574 340 MobiDBLite consensus disorder prediction 94 142 - -
Ssu1g1574 340 MobiDBLite consensus disorder prediction 117 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1574 Ssu-Chr1 37310556 37311578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1574 17 340 Mechanosensitive Ion Channel Family AT5G12080 41.159 8.88e-74 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1574 K22048 - gmx:100777332 506.138