Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1573 atgcCCACGATGCTTTCTATGCCTGCTTGGAGAAGGAATCCAACAGGAAACCCAAAGAGATTGCGTTGGTGGGCTTGCTATATCCACTATAATGCAAATAATGTAGGGATGAATATGTCAAATTGTGTCGATCTTCATCGGTCAAACATTTCGATAGGCAATACTGCCAGAACAATAGGTTTTAGAGACTTTTGGTTGATAAAGGGTCCAGGAGAGATTGCTATTGATGTGGCTACACGGGGATTGGATATTCCAGATGTTGAACTAGTGACCAACTATAGTTTTCCTCTGACTACAGAGGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAGAAAGGTGTTGCCTATACATTCTTCACACAGCAGAATAAGGAATCCAAGCTTTATGGGGCACACTTCAAGGAAATCCCTATTGATGCTACAAAGtttcaaaagaaaacatttGACTACTCTGACGATGAAGACTAA 477 0.4025 MPTMLSMPAWRRNPTGNPKRLRWWACYIHYNANNVGMNMSNCVDLHRSNISIGNTARTIGFRDFWLIKGPGEIAIDVATRGLDIPDVELVTNYSFPLTTEDYVHRIGRTGRAGKKGVAYTFFTQQNKESKLYGAHFKEIPIDATKFQKKTFDYSDDED 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1573 158 PANTHER BNAA08G07020D PROTEIN 66 127 - -
Ssu1g1573 158 Pfam Helicase conserved C-terminal domain 73 113 IPR001650 -
Ssu1g1573 158 CDD SF2_C_DEAD 73 122 - -
Ssu1g1573 158 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 66 127 - -
Ssu1g1573 158 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 158 IPR001650 -
Ssu1g1573 158 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 139 IPR027417 -
Ssu1g1573 158 SMART helicmild6 33 113 IPR001650 -
Ssu1g1573 158 Gene3D - 45 156 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1573 Ssu-Chr1 37258082 37259568 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1573 57 140 Eukaryotic Initiation Factors Gene Family AT1G72730 37.079 1.09e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1573 K14811 - gmx:100806057 136.346