Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1571 ATGGGTGATGTTCTAAGCCCCTTCACAGTCTCATCCCCTCCTCCACCCTCTTCCCCATCAAGCAAGAACAACAGCATACCCATGTTGTACTATGGCCTCGTGGTGGTGGGAACCGCAGCCATAGTGCTAGCCATATACAACCTCATCCTCCTCAAACGTAGCCACAGGCGCCACACGCAATCACAACCTTCGGGGCCAAATCCAATTGAAGGTGTTCCCGAAAGAACAAGGAGCTTGGACAACCAACATAGGAACTTGTTATCGAGCTTCAAGTACAAGAAAGAAGTGGtggcaaaagaagaagaagaggagctAGATGATTTTGAGTGCCCCGTTTGCTTATCGGTTTATGAAGAAGGGGAAGAGGTGAGGAAGCTTCCACAGTGCAAGCACTACTTCCACGTTCTTTGCATAGACATGTGGCTTTACTCTCACTTGGATTGCCCGATTTGTCGAACGCCCGTTGGGCCTTTGTGCTCGCCTGAGAATTCTCGTGATGGGGCGATGGAATCCGGTGGCATCTCTGTTGATTGA 534 0.4794 MGDVLSPFTVSSPPPPSSPSSKNNSIPMLYYGLVVVGTAAIVLAIYNLILLKRSHRRHTQSQPSGPNPIEGVPERTRSLDNQHRNLLSSFKYKKEVVAKEEEEELDDFECPVCLSVYEEGEEVRKLPQCKHYFHVLCIDMWLYSHLDCPICRTPVGPLCSPENSRDGAMESGGISVD 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1571 177 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 165 IPR044675 -
Ssu1g1571 177 SUPERFAMILY RING/U-box 96 158 - -
Ssu1g1571 177 SMART ring_2 110 151 IPR001841 -
Ssu1g1571 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 157 IPR013083 -
Ssu1g1571 177 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Ssu1g1571 177 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 11 165 - -
Ssu1g1571 177 MobiDBLite consensus disorder prediction 1 23 - -
Ssu1g1571 177 Pfam Ring finger domain 109 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1571 Ssu-Chr1 37191218 37191751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1571 20 155 C3H Transcription Factor Family AT1G04360 34.483 7.00e-23 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1571 - - aprc:113852327 244.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0607 6 9590258 9590788 Ssu1g1571 1 37191218 37191751 PCT