Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1566 atgctcacGTGCATAGCACGTCCGAAGAAACTCGGCGGCGACTCGGCGAGTCAGGGGGACGATCCGAGTTCGCGAGGAGGGCAGCAGCACCAGCAGGGCGCGAACCCGAAGTCGCTGACGAGCCAGATAAAGGAGATGGCGCTGAAGGCGTCGGGGGCGTACAGGCAGTGCACTCCGTgcgcggcggcggcggcgacgAGTGGAGCGAGTCGCGGCGGCGCGGGCGAGTCGGACTCGGAGTGGTCGTCGCGGCGGCGGCGGTGGGGGAAGGAGATGGAGGCGCGGCTGAAGGGGATGTCGAGCGGCGAGGGCACGCCGAGCTCGAGCGGTCCGCAGGGTGGTGGTGCTGCTCGAAGACGACGACGAGCCCAAGGAGTGGGTCGCGCAGGTCGAGCCCGGCGTTTTGATCACCTTCGTGTCGCTCCCGCGTGGCGGGAACCATCTCAAACGGATACGATTCAGAAATGGAACTTGGATTGGAACAGTCGCGAGATATTTAACAAATGGCAAGCTCAAAGATGGTGGGCAGAGAACTATGACAAGGTCATGGAACTTTACAATGTTCAAAGGCTTAACCGCCAAGCTTTCCCTCTTCCAACTCCACCCAGGTCTGAAGACGAGAGTTCAAAGCGTGAATCAATTGAAGAGATCCCTGTGACACCTCCACTGAGCAGGGAAAGGCCACCTTGTAATTTATACCGTGCAGGAGGAGGGATGGGGATGGGGATGGGGATGGGGTATTCATCCTCAGATTCGTTTGATCATCAATCAATGCAATCCCGGCATTACTATGACCCGAATGGTGTGAACTCAACCCCAAAGGTGTCCACCATTAGTGCTGCCAAGACAGATATATCATCAATGGATGCTGATGCTTCTATACGAAGTAGCACATCTAGAGAAGCTGATCGCTCTGGGGATCTATCAATCAGCAATGCCAGTGACCTGGACACTGAATGGGTTGAGCAGGATGAACCTGGGGTTTACATTACCCTCAGAGCTCTCCCAGGTGGCAAAAAGGAGCTCAGACGAGTCAGGTTCAGTCGAGAAAAGTTTGGGGAGATGCATGCTAGACTCTGGTGGGGAGAGAACCGTGCCAGAATACATGAACAATACTTGTGA 1122 0.5428 MLTCIARPKKLGGDSASQGDDPSSRGGQQHQQGANPKSLTSQIKEMALKASGAYRQCTPCAAAAATSGASRGGAGESDSEWSSRRRRWGKEMEARLKGMSSGEGTPSSSGPQGGGAARRRRRAQGVGRAGRARRFDHLRVAPAWREPSQTDTIQKWNLDWNSREIFNKWQAQRWWAENYDKVMELYNVQRLNRQAFPLPTPPRSEDESSKRESIEEIPVTPPLSRERPPCNLYRAGGGMGMGMGMGYSSSDSFDHQSMQSRHYYDPNGVNSTPKVSTISAAKTDISSMDADASIRSSTSREADRSGDLSISNASDLDTEWVEQDEPGVYITLRALPGGKKELRRVRFSREKFGEMHARLWWGENRARIHEQYL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1566 373 MobiDBLite consensus disorder prediction 289 311 - -
Ssu1g1566 373 MobiDBLite consensus disorder prediction 197 229 - -
Ssu1g1566 373 PANTHER PROTEIN BREVIS RADIX-LIKE 4 1 110 - -
Ssu1g1566 373 MobiDBLite consensus disorder prediction 61 134 - -
Ssu1g1566 373 ProSiteProfiles BRX domain profile. 318 373 IPR013591 -
Ssu1g1566 373 Pfam Transcription factor BRX N-terminal domain 37 60 IPR027988 -
Ssu1g1566 373 MobiDBLite consensus disorder prediction 1 44 - -
Ssu1g1566 373 MobiDBLite consensus disorder prediction 17 44 - -
Ssu1g1566 373 PANTHER PROTEIN BREVIS RADIX-LIKE 4 162 373 - -
Ssu1g1566 373 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 110 IPR044532 -
Ssu1g1566 373 PANTHER PROTEIN BREVIS RADIX-LIKE 1 162 373 IPR044532 -
Ssu1g1566 373 Pfam Transcription factor regulating root and shoot growth via Pin3 162 186 IPR013591 -
Ssu1g1566 373 Pfam Transcription factor regulating root and shoot growth via Pin3 318 372 IPR013591 -
Ssu1g1566 373 MobiDBLite consensus disorder prediction 78 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1566 Ssu-Chr1 37079081 37087194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1566 1 66 Major Intrinsic Protein MIP AT1G31880 45.455 3.81e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1566 - - pvu:PHAVU_009G229100g 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1566 1 37079081 37087194 Ssu1g1566 1 37079081 37087194 ECH
Ssu6g0610 6 9611599 9616755 Ssu1g1566 1 37079081 37087194 PCT