Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1565 ATGAAGCCATTTCTCTTTTTGAATCATCCCAACACCGAGTTCAGTTGTGCACAAGTTGATTGTAATCACTCAATGGCTCATGCTTCTTATCCTTATGGTGATCCAATTTTTGCTTATGGACCACAGGCTATTAGTCAACCCCAAATGTTACCCCAGATGCTCGGTCTAGCATCCACCAGAGTGGCATTACCACTTGATCTTGCAGAAGATGGACCAATTTATGTCAATGCAAAACAATACCATGGTATACTGAGAAGGCGACAATCACGAGCAAAACTTGAGGCTCAGAACAAACTTATCAAAAGTCGTAAGCCATACCTTCACGAGTCTCGGCACCGCCATGCTTTGAAGAGGGTTAGGGGATCTGGGGGGCGATTTCTCAGCACCAAACAGCTTGCACAGTCTAATGCAGAATTTGTCCCTGGTGCACATTCTGGTTCTGAATCCGCCAACATATATCAAAAGGAACATCCATCAGAGGTGGAAAGTCATTCCTCAAAAGCAGGAGATAATGCATCTTCCATCACAACCTGCTCCGACCGGCCATGTTTATCCGGCAACAGTGTCAATTTTCGGCAGCCGGAATGCATCTTTCTGGGAAACTCTTCAAACATGGGCGGAGCACCACAATTCAGTGGGGGACTCACCTTTGGCGGAACAAAGCAACGTGCTTCAGTTGTCCGGTAA 687 0.4629 MKPFLFLNHPNTEFSCAQVDCNHSMAHASYPYGDPIFAYGPQAISQPQMLPQMLGLASTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALKRVRGSGGRFLSTKQLAQSNAEFVPGAHSGSESANIYQKEHPSEVESHSSKAGDNASSITTCSDRPCLSGNSVNFRQPECIFLGNSSNMGGAPQFSGGLTFGGTKQRASVVR 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1565 228 ProSiteProfiles NF-YA/HAP2 family profile. 69 129 IPR001289 GO:0003700|GO:0006355
Ssu1g1565 228 Gene3D - 69 131 - -
Ssu1g1565 228 SMART cbf3 68 129 IPR001289 GO:0003700|GO:0006355
Ssu1g1565 228 ProSitePatterns NF-YA/HAP2 subunit signature. 74 94 IPR018362 GO:0003677|GO:0016602
Ssu1g1565 228 MobiDBLite consensus disorder prediction 154 174 - -
Ssu1g1565 228 PRINTS CCAAT-binding transcription factor subunit B signature 72 94 IPR001289 GO:0003700|GO:0006355
Ssu1g1565 228 PRINTS CCAAT-binding transcription factor subunit B signature 103 126 IPR001289 GO:0003700|GO:0006355
Ssu1g1565 228 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 72 126 IPR001289 GO:0003700|GO:0006355
Ssu1g1565 228 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 1 216 - -
Ssu1g1565 228 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 216 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1565 Ssu-Chr1 37037961 37039490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1565 16 135 CCAAT-HAP2 Transcription Factor Family AT1G17590 59.843 5.35e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Ssu1g1565 CBFB_NFYA 4.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1565 K08064 - gmx:100793856 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1565 1 37037961 37039490 Ssu1g1565 1 37037961 37039490 ECH