Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1564 ATGGACGGCGGAGCACACTACAACCCTCGCACCGTCGAAGAGGTTTTCCGGGACTTCAAGGGCCGCAGGGCTGGCATGATCAAGGCCCTCACCACTGATGTTGAGGAATTTTACCAGCAGTGCGATCCTGAAAAAGAGAATCTTTGTCTGTATGGATTCCCCACTGAGCAATGGGAAGTTAATTTGCCTGCTGAAGAAGTTCCTCCAGAACTTCCCGAGCCTGCATTGGGCATAAATTTTGCCAGGGATGGGATGCAAGAAAAGGACTGGCTATCTTTAGTTTCTGTTCACAGTGATGCATGGCTACTATCAGTGGCTTTCTATTTTGGGGCAAGATTTGGTTTTGATAAAGCTGACAGGAAACGCCTGTTCACTATGATTAATGATCTGCCTACTATATTTGAGGTTGTAACTGGATCTGCAAAGAAACAGGCAAAGGAGAAGTCATCTGTTTCagaccacaacaacaacaaatcaaaGTCTGGTTCAAAAGGGcGAGGATCTGAGTCTGGGAAGTATTCAAAGCAAGCAAAGGATGAGGATGAGGGATTGGACGAAGATGATGAGGAGCATGGGGAGACCTTGTGTGGTGCATGTGGGGAGAACTATGCATCTGATGAGTTCTGGATTTGTTGTGACATATGTGAGAAGTGGTTTCATGGCAAGTGTGTGAAGATCACTCCTGCCCGGGCTGAGCACATCAAACACTACAAGTGCCCCTCATGCAGCAATAAGAGAGCAAGGCCTTGA 750 0.4587 MDGGAHYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPTEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVSVHSDAWLLSVAFYFGARFGFDKADRKRLFTMINDLPTIFEVVTGSAKKQAKEKSSVSDHNNNKSKSGSKGRGSESGKYSKQAKDEDEGLDEDDEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKHYKCPSCSNKRARP 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1564 249 Pfam PHD-finger 196 245 IPR019787 -
Ssu1g1564 249 SMART PHD_3 195 243 IPR001965 -
Ssu1g1564 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 244 IPR013083 -
Ssu1g1564 249 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Ssu1g1564 249 PANTHER CPG BINDING PROTEIN 3 249 IPR045104 GO:0006355|GO:0042393
Ssu1g1564 249 MobiDBLite consensus disorder prediction 145 189 - -
Ssu1g1564 249 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Ssu1g1564 249 CDD PHD_AL_plant 195 245 IPR044104 -
Ssu1g1564 249 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 249 - -
Ssu1g1564 249 MobiDBLite consensus disorder prediction 155 170 - -
Ssu1g1564 249 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Ssu1g1564 249 SUPERFAMILY FYVE/PHD zinc finger 184 246 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1564 Ssu-Chr1 36997535 37002489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1564 1 248 Alfin-like Transcription Factor Family AT3G42790 74.900 1.82e-125 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Ssu1g1564 Alfin 1.8e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1564 - - cpap:110817645 465.307