Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1557 ATGAAGAAAGGGAGCATAAGCTCCGGTCTCAAACTCAATGTTCCTGCATCTGATCGGGGTTCATTTACCAAGTTCCTGTCTGAAAGCGCTCAGAACCTGCTTGTCAATGAGGAAGGAGTTCGAATTGTCTCTGAGAATGAAGTTGAAGCTCCACCCCCAATCAGGCCACTAGACAACCAGTTAAGTTTGGCAGACATTGATACAATCAAAGTGATTGGAAAAGGAAATGGAGGGATAGTGCAATTGGTGCAACACAAATGGACAAATCAGTTTTTTGCATTAAAGGAAATTCAAATGAATATTGAGGAGCCTATGCGCAGTCAGATAGCAAAAGAgctaaaaattaatcaatcagCACAATGTCCTTATGTTGTTGTCTGCTACCATTCATTTCATCATAATGGTGTCATATCAATCGTCTTAGAGTACATGGATGGAGGGTCCTTAGAAGATCTTCTGAACAAAGTTAAAACAATTCCAGAGGCATATCTTGCTGCCATCTGCAAGCAGGTGTTGAAGGGTTTAATGTATCTTCACCATGAACAGCATATTATCCACAGGGACTTAAAACCTTCTAATTTGCTGATAAATCATAGAGGGGAGGTAAAGATTACTGACTTTGGTGTAAGTGCAATCTTGGAAAATACATCTGGTCAAGCAAATACTGTCATTGGCACATACAGCTATATGTCTCCAGAGAGAATCATTGGTAACCAGGATGGCTACAACTACAAAAGTGATATATGGAGCTTGGGGCTGATTTTGCTCACGTGTGCTACGGGGCGGTTTCCATATACACCACCAGATCAACGTGAAGGATGGGAAAATATCTTCCAGCTCATTGAAGCCATCGTGGAAAAACCTTCACCCAGTGCTCCATCAGATGACTTTTCTCCAGAATTTTGTTCATTTATCTCAGCATGTTTACAGAAAAATCCAGGGGATAGACCGTCAGCTCGGGACCTTATAAATCATCCTTTTATCAACATGCATGAGGACTTGAATGTAGATCTTTCAGCTTATTTCTCCAACGCAGGATCTACACTTGCAACCATATAG 1059 0.406 MKKGSISSGLKLNVPASDRGSFTKFLSESAQNLLVNEEGVRIVSENEVEAPPPIRPLDNQLSLADIDTIKVIGKGNGGIVQLVQHKWTNQFFALKEIQMNIEEPMRSQIAKELKINQSAQCPYVVVCYHSFHHNGVISIVLEYMDGGSLEDLLNKVKTIPEAYLAAICKQVLKGLMYLHHEQHIIHRDLKPSNLLINHRGEVKITDFGVSAILENTSGQANTVIGTYSYMSPERIIGNQDGYNYKSDIWSLGLILLTCATGRFPYTPPDQREGWENIFQLIEAIVEKPSPSAPSDDFSPEFCSFISACLQKNPGDRPSARDLINHPFINMHEDLNVDLSAYFSNAGSTLATI 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1557 352 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 352 - -
Ssu1g1557 352 ProSitePatterns Protein kinases ATP-binding region signature. 72 95 IPR017441 GO:0005524
Ssu1g1557 352 Gene3D Transferase(Phosphotransferase) domain 1 146 349 - -
Ssu1g1557 352 SMART serkin_6 66 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1557 352 ProSiteProfiles Protein kinase domain profile. 66 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1557 352 PANTHER MAP KINASE KINASE 1 352 - -
Ssu1g1557 352 SUPERFAMILY Protein kinase-like (PK-like) 63 333 IPR011009 -
Ssu1g1557 352 Pfam Protein kinase domain 68 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1557 352 Gene3D Phosphorylase Kinase; domain 1 43 145 - -
Ssu1g1557 352 CDD PKc_MAPKK_plant_like 64 332 - -
Ssu1g1557 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1557 Ssu-Chr1 36865376 36869625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1557 32 349 MAP Kinase Kinase Gene Family AT4G26070 64.780 1.79e-157 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Ssu1g1557 Pkinase 5e-69 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1557 1 36865376 36869625 Ssu1g1557 1 36865376 36869625 ECH
Ssu6g0626 6 9759686 9764853 Ssu1g1557 1 36865376 36869625 PCT