Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1556 ATGGAGGAAATAACTTCGACGGTTGCAGTGCCATTCGCACTTGGGAATTTAATACAGAAGGAGCCAGCAGTGACAACCCACATGGAGATAACTGGTCTTAAACTCAGGGCAAATACAGCATCAGCTTTGATATTAAATCCTGCAATTGAGGGTTGTCAGTCCTACACTGTTGGACGTGACAACCACACAGATATTGGTCCACAACCCCAAATGAAAGTGTTTGTAGAGGGAAAGGGGAATCAGGTTGGAGCTGACCTTGTCTCAGAAATGGTTAACAATATTTGTTTCCATGCTGAAAGTCAAAACCAGGcaagaaatgaaaatcaatCCATGTTAGCTAATGATTTTCAGTGTGTGCATATCTCTCAATCTGCTTCTGGTGACAAAAGCAGTCCTTGTAGGGAGGAATCTTCTGTTTTGAGGACTAATTGTTGTGAAATAAATTCACCTATTACCATCAAGGTTGATGATAACATAATTCACGGAAAGTCTAGTTTGACCAAGACAAGTGCAGAGCTAGAGCCAGCGCAGAACATGGTTTCTGTTGCTATGGAACATGAGAATGAAGATGGACGTGGATCAGATGAGTCTGATAAAAAACCATTTGCTGTGCCTTATGAGATGTCAGAGAAGCCAACATGCTTGGAATTGAGTGGTACTACTAGTACTACCCCACTTTGGGGTTGCTCATCAGTTTGTGGAAGGAGAGAGGAGATGGAAGATGCTATTGCTGCCAGGCCTCACCTTTTTCAAGTCACTTCATGGATGGTAATGGATGATCATGTCAGTGAAAACTCAAAATACTCACCAGCCCACTTTTTTGGTGTCTATGATGGACATGGGGGCAGTCAGGTTGCCAATTACTGCCGGGAACATCTTCATTCAGTGCTGGTTGATGAGATAGAAGCTGCACAATCAAGTTTGGATGGAAAAAATGGGAGGGACAACTGGGAGGACCAATGGAAGAAAGCATTCTCCAATTGCTTTCACAAAGTAGATGATGAGGTTGGAGGAGTTGGTGAAGGTAATGGTGCAAGTGTTGAACCTCTTGCTTCTGAGACCGTTGGCTCCACTGCTGTGGTTGCCATTTTGACTCAAACTCACATAATTGTTGCAAACTGTGGAGATTCAAGAGCTGTCTTGTGTCGCGGAAAAGAAGCGCTGCCATTGTCTCATGACCACAAGCCAAATAGAGATGATGAATTGGAAAGGATAGAAGCTGCAGGAGGAAGGGTCATACAATGGAATGGATACCGAGTTCTAGGTGTTTTGGCGGTGTCAAGGTCCATAGGTATGTGTTTATTGCGTTGTTTTTGA 1317 0.432 MEEITSTVAVPFALGNLIQKEPAVTTHMEITGLKLRANTASALILNPAIEGCQSYTVGRDNHTDIGPQPQMKVFVEGKGNQVGADLVSEMVNNICFHAESQNQARNENQSMLANDFQCVHISQSASGDKSSPCREESSVLRTNCCEINSPITIKVDDNIIHGKSSLTKTSAELEPAQNMVSVAMEHENEDGRGSDESDKKPFAVPYEMSEKPTCLELSGTTSTTPLWGCSSVCGRREEMEDAIAARPHLFQVTSWMVMDDHVSENSKYSPAHFFGVYDGHGGSQVANYCREHLHSVLVDEIEAAQSSLDGKNGRDNWEDQWKKAFSNCFHKVDDEVGGVGEGNGASVEPLASETVGSTAVVAILTQTHIIVANCGDSRAVLCRGKEALPLSHDHKPNRDDELERIEAAGGRVIQWNGYRVLGVLAVSRSIGMCLLRCF 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1556 438 PANTHER ALPHABET, ISOFORM E-RELATED 126 433 - -
Ssu1g1556 438 Pfam Protein phosphatase 2C 230 431 IPR001932 -
Ssu1g1556 438 SMART PP2C_4 216 436 IPR001932 -
Ssu1g1556 438 ProSitePatterns PPM-type phosphatase domain signature. 273 281 IPR000222 GO:0043169
Ssu1g1556 438 CDD PP2Cc 228 431 IPR001932 -
Ssu1g1556 438 Gene3D - 218 436 IPR036457 -
Ssu1g1556 438 PANTHER PROTEIN PHOSPHATASE 2C ABI2-LIKE PROTEIN 126 433 - -
Ssu1g1556 438 ProSiteProfiles PPM-type phosphatase domain profile. 226 438 IPR001932 -
Ssu1g1556 438 SUPERFAMILY PP2C-like 223 436 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1556 Ssu-Chr1 36860146 36861839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1556 146 438 PP2C-type Phosphatase Gene Family AT1G17550 45.215 2.94e-78 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1556 K14497 - gmx:100812974 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1556 1 36860146 36861839 Ssu1g1556 1 36860146 36861839 ECH
Ssu6g0627 6 9766042 9768553 Ssu1g1556 1 36860146 36861839 PCT